Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq3640 114 1e-20 seq2763 102 7e-17 seq1230 98.7 9e-16 seq520 98.7 9e-16 seq1 98.7 9e-16 seq3641 95.1 1e-14 seq3972 91.5 1e-13 seq1582 87.8 2e-12 >seq3640 Length=31815103 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | ||| || | || ||||||||||| || ||||| Sbjct 21636547 CTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTGCTTCCCGGCAAA 21636488 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||| | || |||||||| ||||||| ||| | | | Sbjct 21636487 GATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATT 21636428 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||| | ||||| || || || |||| || ||||| Sbjct 21636427 CTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 21636368 Query 35725 AAATATCTGCATT 35737 ||| ||||||||| Sbjct 21636367 AAAGATCTGCATT 21636355 >seq2763 Length=65901067 Score = 102 bits (112), Expect = 7e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 60922669 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 60922610 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | | ||||| ||| |||||| ||||| | | Sbjct 60922609 GATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATT 60922550 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 60922549 CTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 60922490 Query 35725 AAATATCTGCATTCTG 35740 ||| || |||||| || Sbjct 60922489 AAAGATTTGCATTTTG 60922474 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 60922897 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 60922838 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | | ||||| ||| |||||| ||||| | | Sbjct 60922837 GATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATT 60922778 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | |||||||||| ||||| || || || |||| || ||||| Sbjct 60922777 CTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 60922718 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 60922717 AAAGATCTGCAT 60922706 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||||||||||||||| || | | Sbjct 824229 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 824288 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || || ||||| || ||||| |||| | ||||| || | |||| Sbjct 824289 AAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 824348 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | || || | ||| ||| Sbjct 824349 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 824408 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | | ||| || || || || ||||| || || |||||||| Sbjct 824409 TCGAGAGGGATAGTCTTTCCTGTACGGGTTTTTACGAAAATCTGCAT 824455 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 60923125 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 60923066 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | | ||||| ||| |||||| ||||| | | Sbjct 60923065 GATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTATCCTGGATCTTGGCCTTCACATT 60923006 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | |||||||||| ||||| || || || |||| || || || Sbjct 60923005 CTCAATGGTATCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTGAC 60922946 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 60922945 GAAAATCTGCAT 60922934 >seq1230 Length=159902609 Score = 98.7 bits (108), Expect = 9e-16 Identities = 146/203 (72%), Gaps = 7/203 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || |||||||| || |||||||| Sbjct 130889201 CTCTTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAA 130889142 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT---CAG 35661 ||||| |||||||||| | || | || ||||||||| ||| ||| |||| || Sbjct 130889141 TATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACAT 130889083 Query 35662 AGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 ||| | ||||| || | | ||||| | ||||| || || ||||||| || || Sbjct 130889082 TCTTG--ATGGTGTCACTGGGCTTGACCTCAAGGGTGATGGTCTTCCCCGTCAGGGTCTT 130889025 Query 35722 CACAAATATCTGCATTCTGTGCG 35744 |||||| ||||||| ||| |||| Sbjct 130889024 CACAAAGATCTGCA-TCTCTGCG 130889003 >seq520 Length=73916538 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | ||| ||| | || ||||||||||| || ||||| Sbjct 72484132 CTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTCCCAGCAAA 72484191 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||| | || | |||| || |||||||| ||||||| ||| | | | Sbjct 72484192 GATCAGCCTCTGCGGATCAGGGGGAATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATT 72484251 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | || ||||| | ||||| || || || |||| || ||||| Sbjct 72484252 CTCAATGGTATCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 72484311 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 72484312 AAAGATCTGCAT 72484323 >seq1 Length=114275543 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||||||||||||||| || | | Sbjct 8597720 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 8597661 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || || ||||| || ||||| |||| | ||||| || | |||| Sbjct 8597660 AAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 8597601 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | || || | ||| || Sbjct 8597600 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACT 8597541 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| ||||| || || | ||||| || || |||||||| Sbjct 8597540 TCAAGAGTGATAGTTTTTCCTGTAAGGGTTTTTACGAAAATCTGCAT 8597494 >seq3641 Length=30143674 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/200 (72%), Gaps = 5/200 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || |||||||| || ||| |||| Sbjct 24919867 CTCTTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCCAGCTGTTTGCCCCCAAA 24919808 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | || | || ||||||||| ||| ||| |||| | Sbjct 24919807 TATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACAT 24919749 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | || ||||| || | || ||||| | ||||| | | ||||||| || ||||| Sbjct 24919748 TCTCATGGTGTCACTGGGCTCGACCTCAAGGGTGATGG---TCCCCGTCAGGGTCTTCAC 24919692 Query 35725 AAATATCTGCATTCTGTGCG 35744 ||| ||||||| ||| |||| Sbjct 24919691 AAAGATCTGCA-TCTCTGCG 24919673 >seq3972 Length=29216678 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || | | || |||||||| || |||||||| Sbjct 8003232 CTCTTTCTGGATGTTGTAATCCGAAAGAGTGTGGCCATCCTCCAGCTGTTTGCCCGCAAA 8003291 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 | ||| ||||||||||| | || | || ||||||||| ||| ||| || || | | Sbjct 8003292 TGTCAGGCGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACAT 8003350 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | |||||||| | || ||||| | | ||| | | | |||||||| || ||| Sbjct 8003351 TCTCGATGGTGTCGCTGGGCTCGACCTCAAGGGCGAT-GGTCTCCCCGTCAAGGTCTTCG 8003409 Query 35724 CAAATATCTGCATTCTGTGCG 35744 |||| ||||||| ||| |||| Sbjct 8003410 CAAAGATCTGCA-TCTCTGCG 8003429 >seq1582 Length=98468360 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||||| || | || || | || |||||||| || |||||||| Sbjct 98016033 CTCCTTCTGAATGTTGTAATTGGAAAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAA 98015974 Query 35605 TATCAACCGCTGCTGGTCCGAAG-GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG 35663 ||||| ||||||||||| ||| | || |||||| || ||| || || | | Sbjct 98015973 TATCAGACGCTGCTGGTC--AAGTGGGTGCCCTCCTTATCTTGGATTTTGACTTTGACAT 98015916 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | ||||| || | | ||||| | ||||| || || ||||||| | |||| Sbjct 98015915 TCTCGATGGTGTCACT-GGGTGGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGACTTCA 98015857 Query 35724 CAAATATCTGCAT-TCTGTG 35742 |||| |||||||| |||||| Sbjct 98015856 CAAA-ATCTGCATCTCTGTG 98015838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450750335084240