Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3640 455 4e-123 seq1230 132 7e-26 seq1231 125 1e-23 seq702 114 2e-20 seq4546 91.5 2e-13 >seq3640 Length=31815103 Score = 455 bits (504), Expect = 4e-123 Identities = 662/934 (71%), Gaps = 6/934 (1%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326 |||| ||| || |||| || | |||| ||| ||| | | |||||| ||||||||| Sbjct 24467948 TTTAGAAGCCAGCATCCAAGGTAAAAGAATTCTCTATTGGACTTGACATCACTCCCATTC 24468007 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || ||||| || || | ||||| || || ||||| || ||||||| || ||||| | Sbjct 24468008 TCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGCAATATTCT 24468067 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| || ||||| ||||| | | | | || |||| || | ||| || | Sbjct 24468068 CCATAAAGTCAAATGGATTTTCTACTCTGAACACCTTGCTAAAACCCAGTTCCAGCATAA 24468127 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 ||| || || |||||||| ||||| ||||| | |||||||| || ||||| | Sbjct 24468128 GTCTGTCAGCCACAAATTCAATGTACTGCTTCATTAACATGCAATTCATCCCAATGAGCT 24468187 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 | || || | || || || || ||||| | | || || || | | ||||| Sbjct 24468188 TCACAGGCAAGGCGTCAGTGAGGAACTCCTCCTGTATCCTAACAGCATTGATAATTATTT 24468247 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 | ||||| || || |||| ||| | | ||||| ||||| | |||||| |||| Sbjct 24468248 CTTTTACTCTCTGCTCCGACGGTTTATGTACCAGGTGTTTGAACATCAGGCAGGCAAAGT 24468307 Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686 |||| |||| ||||||||||| ||||| | ||| || ||||||||||| |||||||| | Sbjct 24468308 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCA 24468367 Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746 | || || || |||||||| ||||| | |||||||| |||||||||||||||||||| | Sbjct 24468368 GTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCA 24468427 Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACTTCT 39803 |||| ||||| || |||| | ||||| || | | || || | ||| | | Sbjct 24468428 CTGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCTAACGCA 24468487 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 |||||||| || |||||||| ||||||||||| |||| || ||||| |||||||| | Sbjct 24468488 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTAAATGGCATTGAAGAGATATT 24468547 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 |||| | |||||||| || ||||| || | |||||||||||||| ||||| | Sbjct 24468548 CCCTTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGCA 24468607 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 ||||||| || || || || || || || ||||| | || || ||||| || || ||| Sbjct 24468608 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCCTCTGTAATCTGAACTTCTT 24468667 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 | ||||| ||| |||| |||||||| ||||| ||||||||||| ||||| || |||| Sbjct 24468668 GGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTAGCTGCAAAGAAAGCCA 24468727 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103 ||||| || |||||||| ||||| || ||| | ||||| | || || | Sbjct 24468728 GAACATGCGATATGAAATATTTCTCATCAGGCTTCAGAGCTTCCCAGTGCTGAATGTCCT 24468787 Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCC 40163 | || | ||| || || | || |||||||| || ||||| || || || ||||| | || Sbjct 24468788 TGGAAAGATCCACCTCCTTGGCCGTCCAAAAGGAAGCCTCAGCTTTCTTATACATTTGCC 24468847 Query 40164 ATATATCACGATATTGTATTGGAAAAATAACAAA 40197 | |||||| | |||| || ||||| ||| |||| Sbjct 24468848 AAATATCATGGTATTCGATAGGAAAGATAGCAAA 24468881 >seq1230 Length=159902609 Score = 132 bits (146), Expect = 7e-26 Identities = 105/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||||||||| || ||||| || || || || | Sbjct 150440333 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 150440392 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||||||||| ||||| ||||| | Sbjct 150440393 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 150440452 Query 39759 CAACAA 39764 | |||| Sbjct 150440453 CTACAA 150440458 Score = 113 bits (124), Expect = 6e-20 Identities = 101/126 (80%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||||| || ||||| || || || || | Sbjct 150431939 CCTCATCTCTGCTAATAAGTTCATTG--AAATGTGGAGCCGGGCATCAGTCCTCGTTTCT 150431996 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||||||||| ||||| ||||| | Sbjct 150431997 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 150432056 Query 39759 CAACAA 39764 | |||| Sbjct 150432057 CTACAA 150432062 >seq1231 Length=116334831 Score = 125 bits (138), Expect = 1e-23 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||||||||| ||||| | ||| || Sbjct 53055245 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 53055304 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 53055305 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 53055364 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 53055365 ACTACTCTTTCCCC 53055378 Score = 86.0 bits (94), Expect = 9e-12 Identities = 93/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 |||||||| || ||||||||||| || ||||||||||| || || ||||| || || | Sbjct 53060393 AAAATCTTACC---AAATTTTCATTTACAATTCCATCACTGGCTGCGAAAAAGGCTAAGA 53060449 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 || |||||||| || ||||| | | | | ||||||||||| | || ||| |||| Sbjct 53060450 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGTTTATTCCAGTGAGGGAGATCCTTTG 53060509 Query 40107 ATA 40109 ||| Sbjct 53060510 ATA 53060512 >seq702 Length=116768492 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| ||||| ||||| || ||||| || ||||| | || Sbjct 56442966 TGAAATTCTCCTGACAAGACTCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATGGAC 56443025 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| ||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 56443026 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGAGCAATAAGTAAACTG 56443085 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 56443086 TTTCTTATACCAT 56443098 Score = 114 bits (126), Expect = 2e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | || ||||| ||||| | | Sbjct 56472242 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCAAGA 56472301 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | ||||||||||| || | ||||| | || || ||| |||| ||||| || ||||||| Sbjct 56472302 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 56472361 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||||| || || || || |||||| ||||| || |||||||||| Sbjct 56472362 GTTCTACCGTGGTGACGCCACTATATAAGCCTTGGATTACTTTCATGG 56472409 Score = 102 bits (112), Expect = 1e-16 Identities = 118/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCG 39661 ||||| | || | |||||| |||||||| ||| ||||||||||| ||| | | || Sbjct 5323674 TGTTTGACCACCAGGCAGGC-AAGTCACAGCGTAAACCCTCATCTCTGCTACTAAGCTCA 5323732 Query 39662 TTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721 || |||| |||||| || ||||| || || | || |||||||| || || | ||| Sbjct 5323733 TTGGAAAGTGTGAGGCCGGGCATCAGTCCCCCTTTCTTGAGCCAGAACATCGATGCAGCT 5323792 Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGC 39759 || || | ||||||||||||||| ||||| ||||| || Sbjct 5323793 GAACCGGGAAAGAAGATGCCTTCCACTGCGGCAAAGGC 5323830 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| ||||||||||| || | || ||||| |||| | | | Sbjct 56453965 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGT 56454024 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| || ||||| | || || |||||||| || Sbjct 56454025 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCAAGGC 56454084 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 56454085 TCCAGGTAGATAGC 56454098 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || ||||| || ||||| ||||| | |||||||| || ||| Sbjct 56467375 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGGTTG 56467434 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||||||| || | || || || | |||||| |||| | || | ||||||| Sbjct 56467435 TATGTTTCAATTGCAGCATCAATGTCTTCTTCATGAATCCCTACGGATACCCTCATCAAC 56467494 Query 70111 ATATGCTGAGGTCGTTC 70127 |||||||| |||| ||| Sbjct 56467495 ATATGCTGTGGTCTTTC 56467511 >seq4546 Length=144923918 Score = 91.5 bits (100), Expect = 2e-13 Identities = 243/360 (68%), Gaps = 21/360 (6%) Strand=Plus/Plus Query 37347 TCCTGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCA 37404 ||| || || ||||| ||| ||| ||||| | ||| |||| | | ||| ||||| Sbjct 18169683 TCCAGTAGAACCAAAACCTCCTGAACTCCTGTCAGTGT--CATCCAAAACTTGAACTTC- 18169739 Query 37405 TTCAGAT-CAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATT 37463 ||| | | | |||||| | || |||| | | || ||||| || || | ||| || | || Sbjct 18169740 TTCTGTTTCTGGATAAAAAATCCGTTCACAAATGAGCTGCGCAATCCGATCACCTTTTTT 18169799 Query 37464 TATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATC 37523 | || ||| || ||| ||| ||| ||| | || |||| ||| || |||||||| Sbjct 18169800 GACTTCAAACTTCTCTTTGCCAAAATTAGACAGCACAACACCAACATTTCCTCTATAATC 18169859 Query 37524 TTCATCGATTACTCCGCCTCCTACATC---AATACCTTTTAGAGACAAACCCGATCTAGG 37580 |||||| || || || |||||| ||| || | ||| || ||| || || | || Sbjct 18169860 TTCATCTATGACACCAGCTCCTATATCTATAAAATGTTTGGCAGCCAAGCCAGAACGTGG 18169919 Query 37581 AGCTATTCTTCCATAA----CAAAATTTGGGCATAGACATCCGAATATCTGTTTTAATCA 37636 ||||| |||||| ||| || || || | || ||| |||| ||||| || | || Sbjct 18169920 AGCTACTCTTCCGTAAAACCCAGAA----GGAAGAGCTATCTGAATGTCTGTCTTCA-CA 18169974 Query 37637 ATTGTCTTTCTCCA-GGAAGG-ATGGTATAATCGTACGCGCTATATAAATCATATCCCGC 37694 | ||||||||| || || || || ||||| || || || || | ||||| ||||| Sbjct 18169975 A-CCCCTTTCTCCATAGATGGTATTGTGTAATCATAGGCACTGTACAGGTCATAGCCCGC 18170033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686842873927920