Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3640 320 1e-82 seq1230 194 1e-44 seq233 136 3e-27 seq3188 82.4 6e-11 >seq3640 Length=31815103 Score = 320 bits (354), Expect = 1e-82 Identities = 611/893 (68%), Gaps = 28/893 (3%) Strand=Plus/Minus Query 43709 TTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGG 43768 ||||| || |||| ||||| || ||||||||||| || ||||| |||| || |||||| Sbjct 24468872 TTTCCTATCGAATACCATGATATTTGGCAAATGTATAAGAAAGCTGAGGCTTCCTTTTGG 24468813 Query 43769 ACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAAACCAC 43826 || || | || || ||| | | || ||| | ||||| ||| || | || || Sbjct 24468812 ACGGCCAAGGAGGTGGATCTTTCCAAGGACATTCAGCAC--TGGGAAGCTCTGAAGCCTG 24468755 Query 43827 AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 | || ||| |||| ||||| ||| |||| || ||||| || || || || ||||| | Sbjct 24468754 ATGAGAAATATTTCATATCGCATGTTCTGGCTTTCTTTGCAGCTAGTGATGGCATAGTAA 24468695 Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTT 43945 ||||||| ||||| || ||| ||||||||||| ||||| ||| || || ||||| Sbjct 24468694 ATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATTAC-AGAGGCTCGCTGTTTC 24468636 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 ||||| || ||||||||||| ||||| || ||||| |||||||| ||||| || || ||| Sbjct 24468635 TATGGCTTCCAAATTGCCATGGAAAACATGCATTCTGAAATGTATAGTCTCCTCATTGAT 24468576 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT 44065 || ||||| |||||| | || | | | | || ||||| || |||| | ||| Sbjct 24468575 ACTTACATTAAAGATTCCAAAGAAAGGGAATATCTCTTCAATGCCATTTAAACGATGCCT 24468516 Query 44066 GCGATTAAACATAAAGCAGACTGGGC----CCTTAAAT---GGATAAATTCAAATGATTC 44118 | || | || ||||| ||||| | ||| || ||| || | | | | | Sbjct 24468515 TGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGTTAGATTGGGGACAA----AGAGGCTAC 24468460 Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT 44178 | ||||||||| |||| || ||||| | ||||||||||| |||||||| || || || Sbjct 24468459 CTATGGAGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTT 24468400 Query 44179 TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 ||| | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| Sbjct 24468399 TGCATCAATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGA 24468340 Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCT 44298 | || || | ||||| || ||||| || || ||||| ||| || | | | | || Sbjct 24468339 ACTTATTAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACACCT 24468280 Query 44299 AGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGAT 44358 | | |||| || || ||| | | | ||| || || | | || || | ||| Sbjct 24468279 GGTA---CATAAACCGTCGGAGCAGAGAGTAAAAGAAATAATTATCAATGCTGTTAGGAT 24468223 Query 44359 AGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTT 44418 | | | || || | || || || ||||| || | || || |||||| | || Sbjct 24468222 ACAGGAGGAGTTCCTCACTGACGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCATGTT 24468163 Query 44419 GATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAA 44478 ||||| || || ||||||| | || || | | | |||||||||||| | | Sbjct 24468162 AATGAAGCAGTACATTGAATTTGTGGCTGACAGACTTATGCTGGAACTGGGTT----TTA 24468107 Query 44479 ACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCA 44534 || | || ||| |||| || ||||| |||||||| |||||| | ||||||| | Sbjct 24468106 GCAAGGTGTTCAGAGTAGAAAATCCATTTGACTTTATGGAGAATATTGCACTGGAAGGAA 24468047 Query 44535 AAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | || ||||| ||||| || | || || ||||||||| ||||||| || ||| Sbjct 24468046 AGACTAACTTCTTTGAGAAGAGAGTAGGCGAATATCAGAGAATGGGAGTGATG 24467994 >seq1230 Length=159902609 Score = 194 bits (214), Expect = 1e-44 Identities = 431/642 (67%), Gaps = 10/642 (2%) Strand=Plus/Plus Query 40681 TGAGAAATCAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAG 40740 ||||| || | ||||| |||| || || ||| | |||| ||||| || || || | Sbjct 40601884 TGAGAGATGAATTTCCTCTGCTGACAACCAAACATGTGTTCTGGAAGGGTGTTTTGGAGG 40601943 Query 40741 AACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGC 40800 | || | ||||||||||| || | || || ||||| || | || | |||||| Sbjct 40601944 AGTTGCTGTGGTTTATCAAGGGATCCACAAACGCTAAAGAACTGTCTTCGAAGGGAGTGA 40602003 Query 40801 ACATTTGGAATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATT----ACAAGAT 40856 | || ||| |||| | | || | | | || | || | ||||| || ||| Sbjct 40602004 AGATCTGGGATGCCAATGGATCCCGAGACTTTCTGGATGGCCTGGGATTCTCTACCAGA- 40602062 Query 40857 AGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAA 40916 ||| ||||| || | || || |||||||| || |||| | | |||||||| || || Sbjct 40602063 --GGA-GAAGGGGACTTGGGCCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCCGAA 40602119 Query 40917 TATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATA 40976 || | |||| | || |||||| | | ||||| | || ||| | || || || Sbjct 40602120 TACAAAGATATGGATTCAGATTATTCAGGTCAAGGAGTTGACCAACTGCAAAAAGTGATC 40602179 Query 40977 GATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACG 41036 ||||| || ||| || | || || | || | || || |||| || ||||| |||| Sbjct 40602180 GATACCATCAAAACCCACCCTGACGACAGAAGAATCATCATGTGTGCTTGGAATCCAAAA 40602239 Query 41037 GACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAAT 41096 || | | | ||||||| |||| || ||||| | | || ||||| ||||| | Sbjct 40602240 GATCTCCCTCTGATGGCGCTGCCCCCGTGTCACGTCCTCTGCCAGTTCTACGTGGTGGAC 40602299 Query 41097 GGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTT 41156 || || ||||| || || |||| || | || || |||||||| || || | || || Sbjct 40602300 GGCGAGCTGTCCTGCCAGCTGTACCAGCGGTCGGGAGACATGGGCCTGGGCATGCCATTC 40602359 Query 41157 AACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCT 41216 ||||| || || || || ||||||||||| ||||| || ||| | ||| | || || Sbjct 40602360 AACATCGCCAGCTACGCCCTGCTCACGTACATGATCGCGCACATCACCCGGCTCAAGCCA 40602419 Query 41217 GGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTA 41276 ||||| |||||||| || || ||||||| ||| |||||| | |||||||| |||||| | Sbjct 40602420 GGTGACTTTGTTCATACTTTGGGAGATGCACACATTTACCTGAATCACATCGAGCCGCTG 40602479 Query 41277 ACAGA-ACAACTGACACGAAAACCTAGACCATTTCCAACGCT 41317 | ||| || || ||| |||| ||||| || || | ||| Sbjct 40602480 A-AGATTCAGCTTCAGCGAGAACCAAGACCTTTCCCGAAGCT 40602520 Score = 111 bits (122), Expect = 1e-19 Identities = 91/108 (84%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 150438800 CAAGAAGTTCAGATTAC-AGAAGCTCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 150438742 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || ||||| |||||||| ||||| || || ||||| ||||| ||||| Sbjct 150438741 CATACATTCTGAAATGTATAGTCTCCTCATTGATACTTACATTAAAGA 150438694 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| |||| || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 150440468 GGAGAACGGGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCA 150440409 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| ||||||| || | || ||||| ||||| | Sbjct 150440408 TCAATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTT 150440349 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 150440348 ATTAGCAGAGATGA 150440335 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| |||| || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 150432072 GGAGAACGGGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCA 150432013 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGG 44220 | ||||| ||| | ||||||||||| ||||||| || Sbjct 150432012 TCAATATTCTGGCTCAAGAAACGAGGACTGATGCCCGG 150431975 >seq233 Length=141296404 Score = 136 bits (150), Expect = 3e-27 Identities = 205/286 (72%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 47201 CATTGGTTTTA-CAACGTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATT 47259 || |||||| | || ||| | || ||||||||| | ||| | ||| || ||| | | Sbjct 20614411 CAGTGGTTTCAGCAGTGTGCTACAGTTTTTAGGATTATATAAGAAAATTGGTAAATTGGT 20614352 Query 47260 ATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTG 47319 |||||| || ||||| ||||| |||||||| |||| || |||||||| ||| | | | Sbjct 20614351 ATTTCTTGGATTAGATAATGCGGGAAAAACAACATTGCTACACATGCTAAAAGATGACAG 20614292 Query 47320 -CATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCA 47378 | || | | ||| ||| ||||||||||| || || ||| |||| | | |||||||| Sbjct 20614291 ACCTGGACAA-CATGTCCCAACATTACATCCCACTTCAGAAGAACTGATCACTGCTGGCA 20614233 Query 47379 TAACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATT 47438 | || |||| || |||||| | || |||| |||||||| || ||| ||||| |||| | Sbjct 20614232 TGAC-TTTACAACTTTTGATCTGGGTAGACATATTCAAGCTCGAAGAGTGTGGAAAAACT 20614174 Query 47439 ATTTTCATGTCGTTGATGCTATAGTTTATATTGTAGACTGTGCAGA 47484 | ||| || | ||| || || | | | || ||||||||||| Sbjct 20614173 ACCTTCCTGCTATCAATGGCATTGTATTTTTGGTGGACTGTGCAGA 20614128 >seq3188 Length=83067054 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || ||||| | || ||||| ||||| | || || |||| Sbjct 66355319 TGATGGCGCTGCCCCCGTGTCACGCCCTCTGCCAGTTCTACGTGGTGGACGGCGAGCTGT 66355378 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || | || || |||||||| || || || ||||| ||||| || | Sbjct 66355379 CCTGCCAGCTGTACCAGCGGTCGGGAGACATGGGCCTGGGCGTGCCGTTCAACATCGCCA 66355438 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTACC 41204 | || || ||||||||||| ||||| || ||| | ||| Sbjct 66355439 GCTACGCCCTGCTCACGTACATGATCGCGCACATCACC 66355476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397418807806390