Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq1230 159 3e-34 >seq1230 Length=159902609 Score = 159 bits (176), Expect = 3e-34 Identities = 480/736 (65%), Gaps = 15/736 (2%) Strand=Plus/Minus Query 111563 AAATAGCAACATCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAAT-TCAAAGTCA 111621 ||| ||| | ||||| || |||| ||||| || ||||| || || | | |||||| Sbjct 40602624 AAACAGCCATTTCCATTTTAATAGTTGGATGCGGATTATAAC-CTTCAGTCTTAAAGTCT 40602566 Query 111622 TCAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGG 111681 ||||| ||||| ||||| ||||| |||| ||||| || || || || || Sbjct 40602565 TCAGCTTTTAAATCATCAATTGTCTCAACTTTTCGAAGGATTTTGAGCTTCGGGAAAGGT 40602506 Query 111682 GTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCA 111741 | || | ||| |||||| | | | |||| |||||||| | |||| || ||| Sbjct 40602505 CTTGGTTCTCGCTGAAGCTGAATCTTCAGCGGCTCGATGTGATTCAGGTAAATGTGTGCA 40602446 Query 111742 TCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTAT 111801 ||||| | | ||| | || || | |||| | | |||||||| || |||||||| Sbjct 40602445 TCTCCCAAAGTATGAACAAAGTCACCTGGCTTGAGCCGGGTGATGTGCGCGATCATGTAC 40602386 Query 111802 GTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTT 111861 ||||| || ||| || || ||||| ||||||| || |||||||| |||||||| | Sbjct 40602385 GTGAGCAGGGCGTAGCTGGCGATGTTGAATGGCATGCCCAGGCCCATGTCTCCCGACCGC 40602326 Query 111862 TGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAA 111921 || || ||||| || || || | | ||| || || || || || || ||||| Sbjct 40602325 TGGTACAGCTGGCAGGACAGCTCGCCGTCCACCACGTAGAACTGGCAGAGGACGTGACAC 40602266 Query 111922 GGAGGCAATGCCATCCCATTCATAAAG---GGTCCCCATGCACACATGATCATCCTTCTG 111978 || |||| |||||| | | | || ||| ||||||||||| || |||||| Sbjct 40602265 GGGGGCAGCGCCATCAGAGGGAGATCTTTTGGATTCCAAGCACACATGATGATTCTTCTG 40602206 Query 111979 CTGTAGCGATTATGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTACCA 112038 || | | || ||| | || || || || ||||| | |||| ||| Sbjct 40602205 TCGTCAGGGTGGGTTTTGATGGTATCGATCACTTTTTGCAGTTGGTCAACTCCTTGACCT 40602146 Query 112039 GTATAATCCGCCTGACATCCAG-----TGTATGTTGCCCCATAGTGTCTCCATTGGAATC 112093 | |||||| ||| ||||| ||||| |||||| | || ||||| ||||| | Sbjct 40602145 GAATAATC----TGA-ATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGGAAGC 40602091 Query 112094 CATAAATAGGCCCCAGATCTCCCGGGGCTGTATCTGGAAATTGCTCTCTATTCAACAAAT 112153 |||||| || |||| || || || | | ||| | | || || || | Sbjct 40602090 CATAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTAGAGAATCCCAGGCCATCCAGAAAGT 40602031 Query 112154 CACTTCTAATATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTG 112213 | | || | || ||| ||||||||||| || || || | ||| | || |||| Sbjct 40602030 CTCGGGATCCATTGGCATCCCAGATCTTCACTCCCTTCGAAGACAGTTCTTTAGCGTTTG 40601971 Query 112214 TGGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAG 112273 ||||||| | |||||||| ||||| || |||| ||| || |||||| |||| ||| | Sbjct 40601970 TGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAACACATGTTTGG 40601911 Query 112274 TAGTTAGCAGTGGaaa 112289 | || ||||| ||||| Sbjct 40601910 TTGTCAGCAGAGGAAA 40601895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391908923445514