Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2763 100 3e-16 seq1 100 3e-16 seq3640 91.5 2e-13 seq1230 86.0 7e-12 seq1231 84.2 2e-11 >seq2763 Length=65901067 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| ||||||||||||| || | |||||| || || Sbjct 29195885 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGTAGCCTCGTACCAAACTGA 29195944 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||||||||| || || ||| |||||||| || |||||||| |||| | Sbjct 29195945 CCAATAGGCTGCAAGAGGTTTAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 29196004 Query 117425 ATCGT 117429 || || Sbjct 29196005 ATGGT 29196009 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| |||| ||| |||||||| Sbjct 29195885 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGTAGCCTCGTACCAAACTGA 29195944 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| | |||||| || || ||| ||||| ||||||||||||||||| | | Sbjct 29195945 CCAATAGGCTGCAAGAGGTTTAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 29196004 Query 152149 ATCGT 152153 || || Sbjct 29196005 ATGGT 29196009 >seq1 Length=114275543 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 17892762 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 17892821 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||||| |||||||| || ||| Sbjct 17892822 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 17892881 Query 117425 ATCGT 117429 || || Sbjct 17892882 ATAGT 17892886 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 17892762 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 17892821 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | |||||| ||||| || |||||||||||||||||| Sbjct 17892822 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 17892881 Query 152149 ATCGT 152153 || || Sbjct 17892882 ATAGT 17892886 >seq3640 Length=31815103 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||||||| || | |||||| ||||| | ||||||||||| ||||| || ||| Sbjct 24468319 CCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTC 24468378 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| || || | || |||||| |||||||||||||| || |||||| Sbjct 24468379 TTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAG 24468438 Query 74889 GCGACAAGGCGTT 74901 || |||| |||| Sbjct 24468439 GCTACAACACGTT 24468451 >seq1230 Length=159902609 Score = 86.0 bits (94), Expect = 7e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||||| ||||| ||||| || ||||| Sbjct 150440335 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 150440394 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || || | || |||||| |||||||||||||| || |||||||| Sbjct 150440395 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 150440454 Query 74892 ACAAGGCGTT 74901 |||| |||| Sbjct 150440455 ACAACCCGTT 150440464 >seq1231 Length=116334831 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| || | |||||| ||||| | || ||||||||||| || | ||||| Sbjct 53055243 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 53055302 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889 | | ||| || || ||| || || || |||||| || ||||| ||| ||||||| Sbjct 53055303 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 53055362 Query 74890 CGAC 74893 | || Sbjct 53055363 CCAC 53055366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547163480944400