Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq4546 168 9e-37 seq1582 149 8e-31 >seq4546 Length=144923918 Score = 168 bits (186), Expect = 9e-37 Identities = 598/927 (65%), Gaps = 27/927 (3%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 ||||| ||| ||||||| ||||||| || || || || || ||| | |||||||| Sbjct 11861139 CCCCTTAGCAAAGAAGAGGAGCAGTTTCCAATAGCATATTCCATAGTGGTTCACCACAAA 11861080 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || || ||| | || | ||||||||||||||||| || |||||| |||||||| | Sbjct 11861079 ATTGAAATGCTGGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAACTTCTACTGCATT 11861020 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCG---TCTCGGCCATCGCCAGG 13847 ||||||||| || || | | |||| | || | || | || |||||| Sbjct 11861019 CACGTGGACAGAAAATCAG---AGGAGTCCTTCTTAGCCGCAGTGAAGGGCATCGCGTCC 11860963 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 | ||| |||||| ||||| | | || | ||||| || | || |||||| Sbjct 11860962 TTTTTCAGTAACGTCTTTGTGGCCAGTCAGTTGGAGAGTGTGGTTTATGTGTCATGGAGT 11860903 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAG-TGGAG 13966 ||||| ||||||||||||| ||||||| ||||||| ||| || || | |||| Sbjct 11860902 CGCGTTCAGGCCGACCTCAACTGCATGAAGGACCTGTACGGAATGAGCG-CACGCTGGAA 11860844 Query 13967 GTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCG 14026 |||| || | || |||||||| ||||| || || | || |||||||| || || ||| | Sbjct 11860843 GTACTTGATAAATCTGTGCGGCATGGATTTTCCTATTAAAACCAACCTAGAAATTGTGAG 11860784 Query 14027 GGCGCTGAAGGC---CCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCA 14083 | ||| ||| | | |||| | || ||| || || | |||| |||||| ||| Sbjct 11860783 GAAGCTCAAGTCGTTCATGGGTGAAAATAAC---CTTGAAACCGAGAAGATGCCCTCCCA 11860727 Query 14084 CAA-GCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGC----GGCGTGGTGGTC 14138 || | | | | |||| | ||| || ||| | || | || | Sbjct 11860726 TAAAGAAGAAAGGT----GGAAAAAGCA----GTATGCAGTTGTTAATGGGAAGCTGACC 11860675 Query 14139 AACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCT 14198 ||||| || | ||| | || ||||| | || | ||| | || | || Sbjct 11860674 AACACGGGGACTGTCAAAATGCGTCCTCCGCTTGAAACTCCTCTTTTTTCAGGCAGTGCC 11860615 Query 14199 TACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTG 14258 || |||| ||||| | |||||| |||| | || || || | || | | Sbjct 11860614 TATTTTGTGGTCAGCAGGGAGTATGTGGGGTATGTGCTAGAGAATGAAAAAATCCAAAAG 11860555 Query 14259 CTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAG 14318 ||||||| ||| |||||||||||||||| || ||| | || |||||||| | || Sbjct 11860554 TTCATGCAGTGGGCGCAGGACACGTACAGCCCAGATGAGTATCTCTGGGCCACTATCCAA 11860495 Query 14319 AGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATG 14378 || || | | || || || || | | ||||||||| || |||||| Sbjct 11860494 AGGATCCCTGAGGTCCCTGGCTCTCTCTCCCTGAGCCATAAGTACGACTTGTCTGACATG 11860435 Query 14379 TGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCC 14438 ||| | |||||| ||||||||||| ||||||||||| || || || || || Sbjct 11860434 CAGGCGGTTGCCAGGTTTGTCAAGTGGCAGTACTACGAGGGTGACATGTCTAAGGGCGCT 11860375 Query 14439 CTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGAC 14498 | ||||| || ||| ||||||||||||| | | | | ||||| || || |||| ||| Sbjct 11860374 CCCTACCCACCCTGCAACGGCATCCACGTGCGCTCGGTGTGCATTTTTGGAGCCGGAGAC 11860315 Query 14499 GTGAAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGAC 14558 |||| ||| || | | | ||| |||| ||||| ||||| |||| || ||| Sbjct 11860314 TTGAACTGGATGCTGCCCAAGCACCACTTGTTTGCCAATAAGTTTGACGTGGACGTCGAC 11860255 Query 14559 GAGTTCGCCGTGCGCTGTCTGGACGAG 14585 | || ||| | | |||||||| ||| Sbjct 11860254 CACTTTGCCATCCAGTGTCTGGATGAG 11860228 >seq1582 Length=98468360 Score = 149 bits (164), Expect = 8e-31 Identities = 257/369 (70%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 ||||| ||| ||||||| ||||||| || || || || | ||| | |||||||| Sbjct 21621974 CCCCTTAGCAAAGAAGAGGAGCAGTTTCCAATAGCATATTCCTTAGTGGTTCACCACAAA 21621915 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || || ||| | || | ||||||||||||||||| || |||||| |||||||| | Sbjct 21621914 ATTGAAATGCTGGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAACTTCTACTGCATT 21621855 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCAT--CCGGGGCGTCTCGGCCATCGCCAGGT 13848 ||||||||| || || | || ||| | ||| || | || |||||| | Sbjct 21621854 CACGTGGACAGAAAATCAGAGGAGTCCTTCTTAGCCGCGGTGAA--GGGCATCGCGTCCT 21621797 Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908 | ||| |||||| | ||||| | | || | ||||| |||| || ||||||| Sbjct 21621796 GTTTCAGTAACGTCTTCGTGGCCAGTCAGTTGGAGAGTGTGGTTTACGCGTCGTGGAGTC 21621737 Query 13909 GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAG-TGGAGG 13967 |||| ||||||||||||| ||||||| ||||||| ||| || || | |||| | Sbjct 21621736 GCGTTCAGGCCGACCTCAACTGCATGAAGGACCTGTACGGAATGAGCG-CACGCTGGAAG 21621678 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 ||| || | || |||||||| ||||| || || | || |||||||| || || ||| || Sbjct 21621677 TACTTGATAAATCTGTGCGGCATGGATTTTCCTATTAAAACCAACCTAGAAATTGTGAGG 21621618 Query 14028 GCGCTGAAG 14036 ||| ||| Sbjct 21621617 AAGCTCAAG 21621609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658675977505280