Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1230 370 9e-98 seq3188 156 3e-33 seq1231 118 9e-22 seq233 116 3e-21 seq702 111 1e-19 seq4546 100 2e-16 seq1789 89.7 4e-13 seq2029 87.8 1e-12 seq1989 87.8 1e-12 >seq1230 Length=159902609 Score = 370 bits (410), Expect = 9e-98 Identities = 495/687 (72%), Gaps = 1/687 (0%) Strand=Plus/Minus Query 29839 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTA 29898 |||||||| ||| || || | || |||||| |||||||||| || | || || |||||| Sbjct 40602514 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGAATCTTCAGCGGCTCGATGTGATTCAGGTA 40602456 Query 29899 GACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29958 | ||| || ||||||| | || ||||| || || || | |||| ||||| ||| || Sbjct 40602455 AATGTGTGCATCTCCCAAAGTATGAACAAAGTCACCTGGCTTGAGCCGGGTGATGTGCGC 40602396 Query 29959 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 30018 |||||||||||||| || | ||||||||||||||| || || | || || |||||||| Sbjct 40602395 GATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAATGGCATGCCCAGGCCCATGTC 40602336 Query 30019 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 30078 ||||||| |||||| ||||| || || ||||| ||||| |||||| ||||| || | Sbjct 40602335 TCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTCCACCACGTAGAACTGGCAGAG 40602276 Query 30079 GGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGAT 30138 | |||| ||||| || || ||||| || | ||||| || ||||| || |||| ||| Sbjct 40602275 GACGTGACACGGGGGCAGCGCCATCAGAGGGAGATCTTTTGGATTCCAAGCACACATGAT 40602216 Query 30139 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 30198 ||| | ||||| || |||| | | ||||| || | | |||||||| || || || Sbjct 40602215 GATTCTTCTGTCGTCAGGGTGGGTTTTGATGGTATCGATCACTTTTTGCAGTTGGTCAAC 40602156 Query 30199 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTG 30258 || || || || |||| ||| || |||| || || || |||||||||||||| Sbjct 40602155 TCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTG 40602096 Query 30259 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30318 ||| || || || || |||| ||| || ||| | ||| ||| ||| |||| Sbjct 40602095 GAAGCCATAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTAGAGAATCCCAGGCCATCCAG 40602036 Query 30319 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGA 30378 |||||||| ||| || ||||| ||||||||||| || |||||| ||| || ||||| | Sbjct 40602035 AAAGTCTCGGGATCCATTGGCATCCCAGATCTTCACTCCCTTCGAAGACAGTTCTTTAGC 40601976 Query 30379 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30438 ||||||||| || ||| |||||||||| |||||||| || ||||||| || || Sbjct 40601975 GTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAACACATG 40601916 Query 30439 CTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACAC 30498 ||||| || || || ||||| | | | |||| ||| | ||||| || ||||| Sbjct 40601915 TTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCAGGCCGAACAC 40601856 Query 30499 GGACAAGACTCCCGTGCCCGTCCTGTC 30525 ||| | || |||||||| | ||| Sbjct 40601855 CTACAGGGTGCCGGTGCCCGTGCGGTC 40601829 >seq3188 Length=83067054 Score = 156 bits (172), Expect = 3e-33 Identities = 133/164 (81%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 |||||||||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 66355481 AGCCCGGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAACGGC 66355422 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| ||||||| |||||| ||||| || || ||||| ||||| | Sbjct 66355421 ACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTCCACC 66355362 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | |||||| ||||| || || ||||| || Sbjct 66355361 ACGTAGAACTGGCAGAGGGCGTGACACGGGGGCAGCGCCATCAG 66355318 Score = 105 bits (116), Expect = 5e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| || || || ||||||||||||||||| || || || || |||| ||| Sbjct 66352269 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 66352210 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||| | ||| ||| ||| |||| |||||||| ||| || ||||| || Sbjct 66352209 CCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCCAGAAAGTCTCGGGATCCATTGGCATC 66352150 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||||||| || |||||| ||| | ||||| | ||||||||| || Sbjct 66352149 CCAGATCTTCACTCCCTTCGAAGACAATTCTTTAGCGTTTGTGGATCC 66352102 >seq1231 Length=116334831 Score = 118 bits (130), Expect = 9e-22 Identities = 185/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||| ||||| || || || || || || || || || ||||| || || ||||| | Sbjct 6981242 ATGGGCTCCTTGTGGAGGTTCCTTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTT 6981183 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| | |||| ||||| ||||||||||| ||||| || ||||| ||||||| || Sbjct 6981182 TAAAGGTCGACTCTTCTCGGGAATGGAGAACCAGGTCTTCCTGCCCATAATCACCAGATT 6981123 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA-AGGCTCGAAAGTGTTTAAAATCTTTGC 110557 ||| |||||| |||||||| || | ||||| || |||| | | || || || | Sbjct 6981122 CTGTTTGCCTTCTACTGAAGAGGTGGTGGTCATTTTCTGGAAA-TACCTGAATTCATTCC 6981064 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 110616 ||| || |||| ||||| || ||||| || || ||||||||| ||||| || Sbjct 6981063 TGAGT------GGGGGCCAGGGCAGGTCCCCGTTCTTGCCAATGCCCATGTTCTGG-GAC 6981011 Query 110617 GCGGCCACGATACCGTTCAG 110636 | || ||||| | |||||| Sbjct 6981010 ACAGCGACGATGCAGTTCAG 6980991 >seq233 Length=141296404 Score = 116 bits (128), Expect = 3e-21 Identities = 163/226 (72%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 30236 TCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC-CCT 30294 ||||| || | ||||||||||||| || || || || |||| | ||| ||| ||| Sbjct 68914605 TCTGCCCCATCACGCCTCCACTGGAAGCCATAAACTGGGCCCA---CACCCCGTTCTCCT 68914661 Query 30295 GTGCT--CGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30352 || | ||| || | | |||||| ||||| ||| | |||||| |||||||| || Sbjct 68914662 CTGGTGGAGAACACCAGCCTATCCAAAGAGTCTTGGGATCTGTTGGCATCCCAGATTTTC 68914721 Query 30353 ACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 30412 || ||||| ||| || ||||| ||||||||| | || ||| || ||||||| |||| Sbjct 68914722 ACTCCCTTGGAAGACAGTTCTTTAGAGTTTGTGAATCCCTTGATAAAGCACAGCAACTCC 68914781 Query 30413 TCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30458 |||| || ||||||| || || || ||||| || || || |||| Sbjct 68914782 TCCAAAACACCCTTCCAGAACACACTTTTGGTTGTCAGCAGAGGAA 68914827 Score = 104 bits (114), Expect = 2e-17 Identities = 175/250 (70%), Gaps = 9/250 (4%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || | || || || || || ||| | || || ||||| | Sbjct 132920430 ATGAGCTCCTTGTGGAGGTTCCTCGAGTTCTCTACTAAGAACTGCATTAATTCTGTCCTT 132920371 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| ||||| || ||||| ||||||| || Sbjct 132920370 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTGCCCATAATCACCAGATT 132920311 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 110558 ||| |||||| |||||||| || | ||||| | | || | | || || || | Sbjct 132920310 CTGTTTGCCTGCTACTGAAGAGGTGGTGGTCATTTTTTGGAAATACTGGAATTCGTTCCT 132920251 Query 110559 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 110616 || ||| |||| | ||| || ||||| || || ||||||||| ||| |||||| Sbjct 132920250 GAG------CGGAGGCCAGGCCAGGTCCCCGTTCTTGCCAATGCCCATGTTCTGGGACAC 132920197 Query 110617 -GCGGCCACG 110625 ||| | ||| Sbjct 132920196 AGCGACGACG 132920187 Score = 100 bits (110), Expect = 2e-16 Identities = 222/326 (68%), Gaps = 8/326 (2%) Strand=Plus/Plus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 ||||||||| ||| | || || |||||| |||| || || | | || || |||| Sbjct 68913438 TGGGAAAGG-TCTTGATTCTTGCTGAAGCTGAATCTTTAGTGGCCCAATGTGATTTAGGT 68913496 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | || || | ||||| | | ||||| || | || | ||| || || | ||| | Sbjct 68913497 AAATATGTGCATTTCCCAAAGTATT-ACAAAGTCACTGGGCTTTAGACCAGTAATGTGTG 68913555 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | |||||||| || || || | |||||||||||||| || | | || | || |||| Sbjct 68913556 CTATCATGTATGTAAGCAGGGCATAGCTGGCGATGTTGAACTGCATGCCAAAGCCTATGT 68913615 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC-TCCGTCGCTCACGTAAAACTGACAC 30076 | || |||| |||||| | || || ||||| || || | ||| || ||||| || Sbjct 68913616 CTCCTGACCACTGGTACAAACAGCAGGACAGCTCATCATTCAC-CACATAGAACTGGCAG 68913674 Query 30077 ATGGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACA 30134 | ||| |||||| |||| || | ||| |||| || |||| || |||| || |||| Sbjct 68913675 AGGGCATGGCACAGAGGCAGCGACATCAGAGGAAGAA--CTTTTGGATTCCCAGCACACA 68913732 Query 30135 CGATGATGCGCCTGTCTTCTGGGTTG 30160 |||||| | ||||| | |||||| Sbjct 68913733 TGATGATTCTTCTGTCATGAGGGTTG 68913758 >seq702 Length=116768492 Score = 111 bits (122), Expect = 1e-19 Identities = 170/240 (71%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || | || || || || || ||||| || || |||||| | Sbjct 58908486 ATGAGCTCCTTGTGGAGGTTCCTAGAGTTCTCTACTAAGAACTACATTAATTCTGTCTTT 58908545 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| ||||| | ||||| ||||||| || Sbjct 58908546 TAAAGGTCAATTCTTCTCAGGAATGGAGAACCAGGTCTTCTTGCCCATAATCACCAGATT 58908605 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 110558 ||| |||||| |||||||| || | ||||| | | || | || || || || | Sbjct 58908606 CTGTTTGCCTTCTACTGAAGAGGTGGTGGTCATTTTTTGGAAATACTTGAATTCATTCCT 58908665 Query 110559 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 110616 ||| || |||| || || || ||||| || || ||||||||| ||| |||||| Sbjct 58908666 GAGT------GGGGGCCAGGGGAGGTCCCCGTTCTTGCCAATGCCCATGTTCTGGGACAC 58908719 >seq4546 Length=144923918 Score = 100 bits (110), Expect = 2e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || | || || || || || || || ||||| || || ||||| | Sbjct 48099379 ATGAGCTCCTTGTGGAGCTTCCTTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTT 48099320 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| ||||| || ||||| ||||||| || Sbjct 48099319 TAAAGGTCAATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTGCCCATAATCACCAGATT 48099260 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGT 110528 ||| |||||| |||||||| || | ||| Sbjct 48099259 CTGTTTGCCTTCTACTGAAGAAGTGGTGGT 48099230 >seq1789 Length=108226025 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||| | || || || || || || || || || ||||| || || |||| | Sbjct 65826846 ATGAGCTTCTTGTGGAGGTTCCTTGAGTTCTCTACTAAGAACTACATTAATTTTGTCCTT 65826787 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | | ||| | |||| || || ||||||||||| |||||||| ||||| ||||| | || Sbjct 65826786 TAAAAGTCGACTCTTCTCAGGAATGGAGAACCAGGTCTTTCTGCCCATAATCACAAGATT 65826727 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 110558 || |||||| |||||||| || | ||||| | | || | || || | || | Sbjct 65826726 TTGTTTGCCTTCTACTGAAGAGGTGGTGGTCATTTTTTGGAAATACTTGAATTTATTCCT 65826667 Query 110559 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGG 110612 ||| || |||| ||||| || ||||| || || ||||||||| ||||| Sbjct 65826666 GAGT------GGGGGCCAGGGCAGGTC-CCGTTCTTGCCAATGCCCATGTTCTGG 65826619 >seq2029 Length=6895 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || || || ||||| || || ||||| | | ||||| | |||| ||||| Sbjct 6279 TTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGACTCTTCTCGGGA 6220 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| || ||||| ||||||| ||||| |||||| Sbjct 6219 ATGGAGAACCAGGTCTTCCTGCCCATAATCACCAGATTCTGTTTGCCT 6172 >seq1989 Length=108143057 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || || || ||||| || || ||||| | | ||||| | |||| ||||| Sbjct 68976380 TTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTTTAAAGGTCGACTCTTCTCGGGA 68976439 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| || ||||| ||||||| ||||| |||||| Sbjct 68976440 ATGGAGAACCAGGTCTTCCTGCCCATAATCACCAGATTCTGTTTGCCT 68976487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406272379250376