Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3641 104 1e-17 seq1230 100 2e-16 seq3972 87.8 1e-12 seq1 87.8 1e-12 >seq3641 Length=30143674 Score = 104 bits (114), Expect = 1e-17 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| ||||| | ||||| || || ||| ||| || || ||||| ||||| || Sbjct 24919903 GCCACCTCTCAGACGAAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGA 24919844 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || || || ||||| || ||||||| | |||||| ||||| || || Sbjct 24919843 AAGAGTGCGGCCATCCTCCAGCTGTTTGCCCCCAAATATCAGACGCTGCTGGTCAGGTGG 24919784 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| ||| | ||| || | || ||||| | ||| || Sbjct 24919783 GATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACATTCTCATGGTGTCACTGGGCTCGAC 24919725 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || | | || || | || |||||||| |||||||| Sbjct 24919724 CTCAAGGGTGATGG---TCCCCGTCAGGGTCTTCACAAAGATCTGCAT 24919680 >seq1230 Length=159902609 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| ||||| | ||||| || || ||| ||| || || ||||| ||||| || Sbjct 130889237 GCCACCTCGCAGACGAAGCACCAGGTGCAGGGTGGCCTCTTTCTGGATGTTGTAATCCGA 130889178 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || || || ||||| || |||||||| | | |||| ||||| || || Sbjct 130889177 AAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGATGCTGCTGGTCAGGTGG 130889118 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| || | || ||||| | || | Sbjct 130889117 GATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACATTCTTGATGGTGTCACTGGGCTTGA 130889059 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || || | || |||||||| |||||||| Sbjct 130889058 CCTCAAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAGATCTGCAT 130889010 >seq3972 Length=29216678 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||||| ||||| | ||||| || || ||| ||| || || ||||| ||||| || Sbjct 8003196 GCCGCCTCGCAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGA 8003255 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || | | || || || ||||| || |||||| | | ||||| ||||| || || Sbjct 8003256 AAGAGTGTGGCCATCCTCCAGCTGTTTGCCCGCAAATGTCAGGCGCTGCTGGTCAGGTGG 8003315 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| || | || ||||| | ||| | Sbjct 8003316 GATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACATTCTCGATGGTGTCGCTGGGCTCGA 8003374 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || | | | || || || || ||| |||| |||||||| Sbjct 8003375 CCTCAAGGGCGAT-GGTCTCCCCGTCAAGGTCTTCGCAAAGATCTGCAT 8003422 >seq1 Length=114275543 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | |||||| | ||| |||||| ||||||||||||||| || || || Sbjct 8597720 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 8597661 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| ||||| || || ||||| || | | || || || || || Sbjct 8597660 AAAGTACGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 8597601 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| ||||| || |||||| |||| | ||||| || | || ||| Sbjct 8597600 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACT 8597541 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | || || ||||| || || | ||||| || ||||||||||| ||| Sbjct 8597540 TCAAGAGTGATAGTTTTTCCTGTAAGGGTTTTTACGAAAATCTGCATCTTG 8597490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314700148980974