Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1231 230 2e-55 seq1789 221 1e-52 seq702 212 5e-50 seq1 194 1e-44 seq233 183 3e-41 seq4546 178 1e-39 seq3188 122 7e-23 >seq1231 Length=116334831 Score = 230 bits (254), Expect = 2e-55 Identities = 381/548 (70%), Gaps = 3/548 (1%) Strand=Plus/Plus Query 2137 ACTCTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTG 2196 || || ||||| || | ||||| || | || ||||||||||| || || || | ||| Sbjct 6980988 ACGCTGAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATTGGCAAGAACGGGGACCTG 6981047 Query 2197 CCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTC--CA 2254 || ||||| || || | |||||||| | |||| || |||||||| | | || || Sbjct 6981048 CCCTGGCCCCCACTCAGGAATGAATTCAGGTATTTCCAGAAAATGACCACCACCTCTTCA 6981107 Query 2255 CT-GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATT 2313 | || ||||||||| | || |||||||| || ||||| ||||| || ||||| Sbjct 6981108 GTAGAAGGCAAACAGAATCTGGTGATTATGGGCAGGAAGACCTGGTTCTCCATTCCCGAG 6981167 Query 2314 AAAAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCA 2373 || || | ||||| || ||||||| ||| | ||||| |||||| | || || || || Sbjct 6981168 AAGAGTCGACCTTTAAAGGACAGAATTAATGTAGTTCTTAGTAGAGAACTCAAGGAACCT 6981227 Query 2374 CCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGA 2433 |||| || || || |||||||| |||||| | ||| | || | || |||| | | Sbjct 6981228 CCACAAGGAGCCCATTTTGTTGCTAAAAGTCTGGATGATGCCTTAAAACTTATTGAACAA 6981287 Query 2434 CCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAG 2493 ||||||||| | | | || || | | |||||||| | || || || |||| ||| || Sbjct 6981288 CCAGAATTAGCAAATAAAGTAGACATGGTTTGGATAGTGGGAGGCAGTGCTGTTTATAAG 6981347 Query 2494 GAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553 || ||| | | | || | | | |||||| | |||||||| |||| | ||| Sbjct 6981348 GAAGCCATGAATCAACCAGGCCATCTTAAACTGTTTGTGACAAGGATCATGCAGGACTTT 6981407 Query 2554 GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTT 2613 ||| |||| |||| || ||||||||| || | | ||||| |||| || | |||| Sbjct 6981408 GAAAGTGACACATTTTTTCCAGAAATTGATTTGAAGAAATATAAACTTCTCCCAGAATAC 6981467 Query 2614 CCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATAT 2673 |||||||||| || | || || || || || || |||| ||||||||||| ||||| Sbjct 6981468 CCAGGTGTTCTTTCCGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATAT 6981527 Query 2674 Gaaaaaaa 2681 ||||| || Sbjct 6981528 GAAAAGAA 6981535 >seq1789 Length=108226025 Score = 221 bits (244), Expect = 1e-52 Identities = 380/548 (69%), Gaps = 4/548 (1%) Strand=Plus/Plus Query 2137 ACTCTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTG 2196 || |||||||| || | ||| | || | || ||||||||||| || || || | ||| Sbjct 65826593 ACACTAAACTGCATCGTCGCTATGTCCCAGAACATGGGCATTGGCAAGAACGGGAC-CTG 65826651 Query 2197 CCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTC--CA 2254 || ||||| || || | ||| |||| || |||| ||||||||||| | | || || Sbjct 65826652 CCCTGGCCCCCACTCAGGAATAAATTCAAGTATTTCCAAAAAATGACCACCACCTCTTCA 65826711 Query 2255 CT-GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATT 2313 | || ||||| ||| |||| |||||||| |||||||| ||||| || |||| Sbjct 65826712 GTAGAAGGCAAACAAAATCTTGTGATTATGGGCAGAAAGACCTGGTTCTCCATTCCTGAG 65826771 Query 2314 AAAAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCA 2373 || || | | ||| || ||| ||| ||| | ||||| |||||| | || || || || Sbjct 65826772 AAGAGTCGACTTTTAAAGGACAAAATTAATGTAGTTCTTAGTAGAGAACTCAAGGAACCT 65826831 Query 2374 CCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGA 2433 |||| | ||||| |||||||| |||||| | ||| | || | || |||| | | Sbjct 65826832 CCACAAGAAGCTCATTTTGTTGCTAAAAGTCTGGATGATGCCTTAAAACTTATTGAACAA 65826891 Query 2434 CCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAG 2493 ||||||||| | | | || || | |||||||| | || || || |||| ||| || Sbjct 65826892 CCAGAATTAGCAAATAAAGTAGACATAGTTTGGATAGTGGGAGGCAGTGCTGTTTATAAG 65826951 Query 2494 GAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553 || ||| | | | || | | | |||||| | |||||||| |||| | ||| Sbjct 65826952 GAAGCCATGAATCAACCAGGCCATCTTAAACTGTTTGTGACAAGGATCATGCAGGACTTT 65827011 Query 2554 GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTT 2613 ||| |||| |||| || ||||||||| || | | ||||| |||| || | |||| Sbjct 65827012 GAAAGTGACACATTTTTTCCAGAAATTGATTTGAAGAAATATAAACTTCTCCCAGAATAC 65827071 Query 2614 CCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATAT 2673 |||||||||| || | || || || || || || |||| |||||||||||| ||||| Sbjct 65827072 CCAGGTGTTCTTTCCGATGTCCAGGAGGAGAAAGGCATTAAATACAAATTTGAAGTATAT 65827131 Query 2674 Gaaaaaaa 2681 ||||| || Sbjct 65827132 GAAAAGAA 65827139 >seq702 Length=116768492 Score = 212 bits (234), Expect = 5e-50 Identities = 378/549 (69%), Gaps = 7/549 (1%) Strand=Plus/Minus Query 2137 ACTCTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTG 2196 || |||||||| | | ||||| || | || ||||||||||| || || || | || Sbjct 58908740 ACACTAAACTGCCTCGTCGCTGTGTCCCAGAACATGGGCATTGGCAAGAACGGGGACCTC 58908681 Query 2197 CCATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATG---ACATCTTCTTCC 2253 || ||||| || || | |||||||| || |||| ||||||||| || | ||||| Sbjct 58908680 CCCTGGCCCCCACTCAGGAATGAATTCAAGTATTTCCAAAAAATGACCACCACCTCTTCA 58908621 Query 2254 ACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATT 2313 || ||||||||| | || |||||||| | ||||| ||||| || |||| | Sbjct 58908620 GTAGAAGGCAAACAGAATCTGGTGATTATGGGCAAGAAGACCTGGTTCTCCATTCC--TG 58908563 Query 2314 AAAAGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGC 2371 | ||| | | ||||| || ||||||| ||| | ||||| |||||| | || | || | Sbjct 58908562 AGAAGAATTGACCTTTAAAAGACAGAATTAATGTAGTTCTTAGTAGAGAACTCTAGGAAC 58908503 Query 2372 CACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAG 2431 | |||| || ||||| ||| |||| |||||| | ||| | || | || |||| | Sbjct 58908502 CTCCACAAGGAGCTCATTTTATTGCTAAAAGTCTGGATGATGCCTTAAAACTTATTGAAC 58908443 Query 2432 GACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATG 2491 |||||||||| | | | || || | | |||||||| | || || || |||| ||| Sbjct 58908442 AACCAGAATTAGCAAATAAAGTAGACATGGTTTGGATAGTGGGAGGCAGTGCTGTTTATA 58908383 Query 2492 AGGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAAT 2551 |||| || | | | || | | | |||||| | |||||||| |||| | | Sbjct 58908382 AGGAAGCCAAAAATCAACCAGGCCATCTTAAACTGTTTGTGACAAGGATCATGCAGGACT 58908323 Query 2552 TTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAAT 2611 ||||| |||| |||| || ||||||||| || | | ||||| |||| || | |||| Sbjct 58908322 TTGAAAGTGACACATTTTTTCCAGAAATTGATATGAAGAAATATAAACTTCTCTCAGAAT 58908263 Query 2612 TTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATAT 2671 |||||||||| || | || || || || || || || | |||||||||||| ||| Sbjct 58908262 GCCCAGGTGTTCTTTCCGATGTCCAGGAGGAGAAAGGCATGAAATACAAATTTGAAGTAT 58908203 Query 2672 ATGaaaaaa 2680 |||||| || Sbjct 58908202 ATGAAAGAA 58908194 >seq1 Length=114275543 Score = 194 bits (214), Expect = 1e-44 Identities = 184/235 (78%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1291 TTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAATG 1350 |||| |||||||| ||| || || |||||||||||||| ||||||| || ||| | Sbjct 100821326 TTGTGACATGGCAGAAAAAGAAGGCTACAAGCCCAGAAAACCTGGCCACCTTCAGTGAGC 100821267 Query 1351 ACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGAC 1410 ||| || ||||| || |||||||| || || | || |||||||| |||||||| |||| Sbjct 100821266 TCCATGGCGTTGTAGTCCAGCCAGCCTATAAGAACAAGATGAACATCACTGAGCTGGGAC 100821207 Query 1411 TACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAGT 1470 | |||||| |||| || ||||||||||| || || |||| ||||||||||| |||| || Sbjct 100821206 TCCAAAACTCAACAATCACCTTCTGGAATACCACCCTGGAGGATGAAGGGTGTTACATGT 100821147 Query 1471 GTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 || | || || | ||||| ||||||||||| ||||||| || || || ||||| Sbjct 100821146 GTCTCTTCAATATCTTTGGTTCTGGGAAGATCTCAGGAACAGCCTGCCTCACCCT 100821092 >seq233 Length=141296404 Score = 183 bits (202), Expect = 3e-41 Identities = 364/534 (68%), Gaps = 9/534 (2%) Strand=Plus/Plus Query 2155 GCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAA 2214 ||||| || | || ||||||||||| || || || | ||| | |||||||| || | Sbjct 132920194 GCTGTGTCCCAGAACATGGGCATTGGCAAGAACGGGGACCTGGCCTGGCCTCCGCTCAGG 132920253 Query 2215 AATGAATTTAAACATTTTCAAAAAATGACATCTTCTTCCACTGACTTA---AAACAGAAT 2271 || ||||| | |||| ||||||||||| | | || | | | ||||||||| Sbjct 132920254 AACGAATTCCAGTATTTCCAAAAAATGACCACCACCTCTTCAGTAGCAGGCAAACAGAAT 132920313 Query 2272 GTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA--GGCCTTTGA 2329 | || |||||||| || ||||| ||||| || |||| | | ||| | | ||||| | Sbjct 132920314 CTGGTGATTATGGGCAGGAAGACCTGGTTCTCCATTCC--TGAGAAGAATCGACCTTTAA 132920371 Query 2330 ACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACT 2389 | ||||||| ||| ||||| |||||| | || | || || |||| || ||||| | Sbjct 132920372 AGGACAGAATTAATGCAGTTCTTAGTAGAGAACTCGAGGAACCTCCACAAGGAGCTCATT 132920431 Query 2390 TTGTTGCAAAAAGTATAGATCACG-CTCTGGAAATTATAATAGGACCAGAATTAAAAGAC 2448 |||||||||||||| | ||| | | || | || |||| |||||||||| | | Sbjct 132920432 TTGTTGCAAAAAGTCTGGATGATGCCTTTAAAACTTATTGAGCAACCAGAATTAGCAAAT 132920491 Query 2449 AGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTACAAGA 2508 | || || | | |||||||| | || || || |||| ||| |||| ||| | | Sbjct 132920492 AAAGTAGACATGGTTTGGATAGTGGGAGGCAGTGCTGTTTATAAGGAAGCCATGAATCAA 132920551 Query 2509 TCTTGCAAACAGATGCTGTTTTTAAC-AAGGATTCTGCAAAAATTTGAATGTGATACATA 2567 | || | | |||||| | || |||||| |||| | |||||| |||| |||| Sbjct 132920552 CCAGGCCCTCTTAAACTGTTTGTGACAAAGGATCATGCAGGACTTTGAAAGTGACACATT 132920611 Query 2568 CTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTC 2627 || ||||| ||| || | | ||||| |||| || | |||| |||||||||| || Sbjct 132920612 TTTTCCAGAGATTGATTTGAAGAAATAAAAACTTCTCTCAGAATACCCAGGTGTTCTTTC 132920671 Query 2628 TGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 | || || || || || || ||| ||||||||| | |||||||||| || Sbjct 132920672 CGATGTCCAGGAGGAGAAAGGCGTTAAGTACAAATTTTAAGTATATGAAAAGAA 132920725 >seq4546 Length=144923918 Score = 178 bits (196), Expect = 1e-39 Identities = 328/473 (69%), Gaps = 10/473 (2%) Strand=Plus/Plus Query 2215 AATGAATTTAAACATTTTCAAAAAATGACATCTTCTTC--CACT-GACTTAAAACAGAAT 2271 |||||||| || |||| |||||||| || | |||| || | || ||||||||| Sbjct 48099203 AATGAATTCAAGTATTTCCAAAAAATTACCACCACTTCTTCAGTAGAAGGCAAACAGAAT 48099262 Query 2272 GTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA--GGCCTTTGA 2329 | || |||||||| || ||||| ||||| || |||| | | ||| | | ||||| | Sbjct 48099263 CTGGTGATTATGGGCAGGAAGACCTGGTTCTCCATTCC--TGAGAAGAATTGACCTTTAA 48099320 Query 2330 ACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACT 2389 | ||||||| ||| | ||||| |||||| | || || || | |||| || ||||| | Sbjct 48099321 AGGACAGAATTAATGTAGTTCTTAGTAGAGAACTCAAGGAAGCTCCACAAGGAGCTCATT 48099380 Query 2390 TTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGACA 2449 ||||||| |||||| | ||| | || | || |||| | |||||||||| | | | Sbjct 48099381 TTGTTGCTAAAAGTCTGGATGATGCCTTAAAACTTATTGAACAACCAGAATTAGCAAATA 48099440 Query 2450 GGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGC-ATTACAAGA 2508 || || | | |||||||| | || || || |||| ||| |||| ||| || | | Sbjct 48099441 AAGTAGACATGGTTTGGATAGTGGGAGGCAGTGCTGTTTATAAGGA-AGCTATGAATCAA 48099499 Query 2509 TCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATAC 2568 | || | | | |||||| | |||||||| |||| | |||||| |||| |||| Sbjct 48099500 CCAGGCCATCTTAAACTGTTTGTGACAAGGATCATGCAGGACTTTGAAAGTGACACATTT 48099559 Query 2569 TTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCT 2628 || |||||||| | | | || || |||| || | |||| |||||||||| ||| Sbjct 48099560 TTTTCAGAAATTGCTTTGAAGAA-TATAAACTTCTCTCAGAATACCCAGGTGTTCTTTCT 48099618 Query 2629 GCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 | || || || || || || ||| ||||||||||| |||||||||| || Sbjct 48099619 GATGTCCAGGAGGAGAAAGGCATTGAGTACAAATTTGAAGTATATGAAAAGAA 48099671 >seq3188 Length=83067054 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 21875125 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 21875184 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 21875185 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 21875244 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 21875245 ATCGCCCTGTGGATGACTGA 21875264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414438015074392