Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3641 116 3e-21 seq1230 116 3e-21 seq3972 100 2e-16 seq1582 87.8 2e-12 seq3398 86.0 5e-12 seq2763 82.4 7e-11 >seq3641 Length=30143674 Score = 116 bits (128), Expect = 3e-21 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| ||||| | || | ||||| || || ||| |||||| || || || ||||| | Sbjct 24919903 GCCACCTCTCAGACGAAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGA 24919844 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 ||| || || | || || |||||||||||| ||||||| |||||||||||||| ||||| Sbjct 24919843 AAGAGTGCGGCCATCCTCCAGCTGTTTGCCCCCAAATATCAGACGCTGCTGGTCAGGTGG 24919784 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | || ||| ||||| |||||| ||||| | | || || || || | ||| | Sbjct 24919783 G-ATGCCCTCCTTGTCTTGGATTTTGGCTTTGA-CATTCTCATGGTGTCACTGGGCTCGA 24919726 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || | |||| | | |||||||| || || |||||||| ||||||| Sbjct 24919725 CCTCAAGGGTGA---TGGTCCCCGTCAGGGTCTTCACAAAGATCTGCATCT 24919678 >seq1230 Length=159902609 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | || | ||||| || || ||| |||||| || || || ||||| | Sbjct 130889237 GCCACCTCGCAGACGAAGCACCAGGTGCAGGGTGGCCTCTTTCTGGATGTTGTAATCCGA 130889178 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 ||| || || | || || |||||||||||||||||||| ||| |||||||||| ||||| Sbjct 130889177 AAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGATGCTGCTGGTCAGGTGG 130889118 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | || ||| ||||| |||||| ||||| || | || || || | || | Sbjct 130889117 G-ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTTGATGGTGTCACTGGGCTTGA 130889059 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || | ||||| | || |||||||| || || |||||||| ||||||| Sbjct 130889058 CCTCAAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAGATCTGCATCT 130889008 >seq3972 Length=29216678 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | || | ||||| || || ||| |||||| || || || ||||| | Sbjct 8003196 GCCGCCTCGCAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCCGA 8003255 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 ||| || | | || || |||||||||||||||||| | || ||||||||||| ||||| Sbjct 8003256 AAGAGTGTGGCCATCCTCCAGCTGTTTGCCCGCAAATGTCAGGCGCTGCTGGTCAGGTGG 8003315 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | || ||| ||||| |||||| ||||| || | | || ||||| | ||| | Sbjct 8003316 G-ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCGCTGGGCTCGA 8003374 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || | | ||| | | ||||||| || || ||||||| ||||||| Sbjct 8003375 CCTCAAGGGCGAT-GGTCTCCCCGTCAAGGTCTTCGCAAAGATCTGCATCT 8003424 >seq1582 Length=98468360 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/213 (70%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||| || || || || |||| || ||| || || | || || Sbjct 98016051 CACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAATTGGAAAGAGTGCGGCCATCCTC 98015992 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 |||||||||||||||||||| |||||||||||||| ||||| || ||| || || Sbjct 98015991 CAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAAGTGGG--TGCCCTCCTTATCTT 98015934 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||| ||||| || | | || || || | | || || | ||||| | | Sbjct 98015933 GGATTTTGACTTTGACATTCTCGATGGTGTCACT-GGGTGGACCTCAAGGGTGATGGTCT 98015875 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | |||||||| | || ||||| || ||||||| Sbjct 98015874 TGCCCGTCAGGGACTTCACAAA-ATCTGCATCT 98015843 >seq3398 Length=72247402 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/193 (71%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 |||| || || || ||||| | ||| || || | || || ||||||||||||||||| | Sbjct 17330115 CTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAA-A 17330057 Query 39155 TAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 | ||||||||| |||| |||||| | || ||| ||||| |||||| ||||| || Sbjct 17330056 TCAGACGCTGCGGGTCAGGTGGG-ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTC 17329998 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 || || || | ||| | || | ||||| | || | ||||| || || ||| Sbjct 17329997 TGGCTGGTGTCTCTGGGCTCAGCCTCAAGGGTGATGGTCTTCCTGGTCAGGGTCTTCACA 17329938 Query 39274 AAGATTTGCATCT 39286 ||||| ||||||| Sbjct 17329937 AAGATCTGCATCT 17329925 >seq2763 Length=65901067 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || || || || | ||| || || | || || ||||| ||||| ||||| Sbjct 60922669 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 60922610 Query 39153 TATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 || || | ||||||||| || ||| | || || || ||| ||| || || | Sbjct 60922609 GATGAGCCTCTGCTGGTCAGGAGGGATCCCT-TCCTTATCCTGGATCTTGGCCTTCACAT 60922551 Query 39212 TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 || | | || || || | |||||| |||| ||||| | || || ||||| || || | Sbjct 60922550 TCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCA 60922491 Query 39272 CAAAGATTTGCATCTTTAC 39290 ||||||||||||| || || Sbjct 60922490 CAAAGATTTGCATTTTGAC 60922472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429505405002014