Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 127 1e-24 seq2763 113 3e-20 seq233 111 1e-19 seq3640 104 2e-17 seq4347 98.7 7e-16 seq3641 93.3 3e-14 seq1230 93.3 3e-14 seq520 89.7 3e-13 seq4546 84.2 1e-11 >seq1 Length=114275543 Score = 127 bits (140), Expect = 1e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| || |||||||| |||||||| |||||||| || Sbjct 8597491 AAGATGCAGATTTTCGTAAAAACCCTTACAGGAAAAACTATCACTCTTGAAGTTGAACCC 8597550 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || || ||| Sbjct 8597551 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 8597610 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||| ||||| | ||| ||||| || ||| Sbjct 8597611 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGACTAC 8597670 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | || || || Sbjct 8597671 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 8597708 >seq2763 Length=65901067 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||||| || ||||| || ||| ||||||| ||||| || || Sbjct 824455 ATGCAGATTTTCGTAAAAACCCGTACAGGAAAGACTATCCCTCTCGAGGTTGAACCCTCG 824396 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| |||| || || || || ||||| | || || ||||| Sbjct 824395 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 824336 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| ||||| ||||| ||||| | ||| ||||| || |||||| Sbjct 824335 CAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGACTACAAC 824276 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| |||||||| | ||| | || || || Sbjct 824275 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 824241 >seq233 Length=141296404 Score = 111 bits (122), Expect = 1e-19 Identities = 159/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| || ||||| || |||||||| || || || || Sbjct 109921895 AAGATGCAGATTTTCGTAAAAACCCTTACAGGAAAGACTATCACTCTGGAGGTCGAACCC 109921836 Query 23668 ACGGACACTGTTGAAATATTAAA--ACAAAAAATTGC--TGACAAAGAAGGTGTACCGCC 23723 |||| || | |||| |||| ||| | | || || |||||||| | || || Sbjct 109921835 TCGGATACAATAGAAAATGTAAAGGCCAAGATAAGGCCAGGATAAAGAAGGAATTCCTCC 109921776 Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783 ||||| || | | || ||||| ||||| ||||| ||||| | ||| ||||| || Sbjct 109921775 TGATCAGCAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGA 109921716 Query 23784 TTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||||||| || || |||||||| | ||| | || || || Sbjct 109921715 CTACAACATTCAGAAGGAGTCCACTCTTCATCTTGTGTTGAG 109921674 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| || ||||| || ||||||||||| || || || Sbjct 108314880 AAGATGCAGATTTTCGTAAAAACCCTTACAGGAAAGACTATCACTCTCGAGGTCGAACCC 108314939 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || |||||| Sbjct 108314940 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGAT 108314999 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||| ||||| | ||| ||||| || || Sbjct 108315000 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGACTAT 108315059 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 | ||| ||||| ||||||| | ||| | || || || Sbjct 108315060 ACCATTCAAAAGCAGTCCACTCTTCATCTTGTGTTGAG 108315097 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||| |||||||| | |||||||| | ||| | | |||| ||| || ||||| || Sbjct 25646375 AAAATGGAGATTTTCATAAAAACCCTTATGGGGAGGATCATCATTCTTGAGGTTGAACCC 25646316 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTG-ACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | ||| ||||| || || ||| | || ||||| | || | | Sbjct 25646315 TCAGACACAATACAAAATGTAAAAGCCAAGATC-CTGCATAAGGAAGGAATTCCTCTTTA 25646257 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || | | || ||||| ||||| ||||||||||| | | | ||||| || | Sbjct 25646256 TCAGCACAGACTGATTTTTGCTGGCAAGCAACTGGAAGAGGGATGTACTTT----GACGA 25646201 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 |||||| ||||| |||||||| || ||| | || || Sbjct 25646200 CAACATTCAAAACGAGTCCACTTTTCATCTTGTGTT 25646165 >seq3640 Length=31815103 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||||| || || || || ||||| ||||| || || ||| Sbjct 21636355 AATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 21636414 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || |||| | | ||||| ||||| | || || |||| Sbjct 21636415 CGACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGCATCCCTCCTGATC 21636473 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || |||||||| || || |||||||| | |||||| | || |||| Sbjct 21636474 AGCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGACGCACCCTCTCTGACTACA 21636533 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 21636534 ACATCCAGAAAGAGTCCAC 21636552 >seq4347 Length=47401472 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| ||| | ||||| ||| Sbjct 19988743 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCAAGGTTGAGCCCAGT 19988684 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | | ||||| |||||| |||| || ||||| Sbjct 19988683 GACACCATTGAGAATGTCAAGGCAAAGA-TCGAAGACAAGGAAGGTATACCCCCTGATCA 19988625 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| | || || ||| |||| | | |||| | || ||||| Sbjct 19988624 GCAGAGGCTGATCTTTGCTAGGAAGCAGCTGTAAGATGGATGCACCCTCTCTGACTACAA 19988565 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 19988564 CATCCAGAAAGAGTCCAC 19988547 >seq3641 Length=30143674 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| | | ||||| || || || || ||| Sbjct 24919680 ATGCAGATCTTTGTGAAGACCCTGACGGGGA---CCATCACCCTTGAGGTCGAGCCCAGT 24919736 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | ||| | ||| | |||| | ||||| || || | || || || || Sbjct 24919737 GACACCATGAGAATGTCAAAGCCAAAA-TCCAAGACAAGGAGGGCATCCCACCTGACCAG 24919795 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | ||||||| |||||||| ||||| || | |||||| | ||||||||| Sbjct 24919796 CAGCGTCTGATATTTGGGGGCAAACAGCTGGAGGATGGCCGCACTCTTTCGGATTACAAC 24919855 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 24919856 ATCCAGAAAGAGTCCAC 24919872 >seq1230 Length=159902609 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| || || ||||| || || || | ||| Sbjct 130889010 ATGCAGATCTTTGTGAAGACCCTGACGGGGAAGACCATCACCCTTGAGGTCAAGCCCAGT 130889069 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | | ||| | ||| | |||| | ||||| || || | || || || || Sbjct 130889070 GACACCATCAAGAATGTCAAAGCCAAAA-TCCAAGACAAGGAGGGCATCCCACCTGACCA 130889128 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | |||||||| |||||||| ||||| || | |||||| | |||||||| Sbjct 130889129 GCAGCATCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTTTCGGATTACAA 130889188 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||| |||| Sbjct 130889189 CATCCAGAAAGAGGCCAC 130889206 >seq520 Length=73916538 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| ||||| ||||| ||| Sbjct 72484323 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 72484264 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || |||| | | ||||| ||||| | || || |||| Sbjct 72484263 GATACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGCATTCCCCCTGATCC 72484205 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || |||||||| | ||||| | || ||||| Sbjct 72484204 GCAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAA 72484145 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 72484144 CATCCAGAAAGAGTCCAC 72484127 >seq4546 Length=144923918 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/199 (69%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | | |||||| | ||| || || || |||||||| ||||| || Sbjct 25086793 AAGATGCAGATTTTCATAATAACCCTTATGGGGAAGACCATGACTCTCGAGGTTGAACCC 25086852 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| |||| || || || || ||||| | || | || Sbjct 25086853 TCAGATACATTAGAAAATGTAAAGACCAAGATCCAGGATAAGGAAGGAATTCCTCTTGAC 25086912 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | ||| ||||| || || Sbjct 25086913 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTT----GACTAT 25086968 Query 23788 AACATACAAAAAGAGTCCA 23806 ||||| ||||| ||| ||| Sbjct 25086969 AACATTCAAAAGGAGACCA 25086987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337977970540424