Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1230 334 6e-87 seq3188 158 1e-33 seq233 132 4e-26 seq1231 100 2e-16 seq702 93.3 3e-14 seq4546 82.4 6e-11 >seq1230 Length=159902609 Score = 334 bits (370), Expect = 6e-87 Identities = 459/648 (71%), Gaps = 1/648 (0%) Strand=Plus/Minus Query 29611 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTA 29670 |||||||| ||| || || | || ||||||||| ||||||| || | ||| | ||||| Sbjct 40602514 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGAATCTTCAGCGGCTCGATGTGATTCAGGTA 40602456 Query 29671 GACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29730 | ||| |||||||||| || || ||||| || || || | |||| ||||| ||| || Sbjct 40602455 AATGTGTGCATCTCCCAAAGTATGAACAAAGTCACCTGGCTTGAGCCGGGTGATGTGCGC 40602396 Query 29731 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTC 29790 |||||||||||||| || | ||||||||||||||| || |||| || || |||||||| Sbjct 40602395 GATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAATGGCATGCCCAGGCCCATGTC 40602336 Query 29791 CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 29850 || |||| |||||| |||||||| || ||||| ||||| |||||| ||||| || | Sbjct 40602335 TCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTCCACCACGTAGAACTGGCAGAG 40602276 Query 29851 GGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGAT 29910 | | || ||||| || || ||||| ||| | ||||| || ||||| ||||||| ||| Sbjct 40602275 GACGTGACACGGGGGCAGCGCCATCAGAGGGAGATCTTTTGGATTCCAAGCACACATGAT 40602216 Query 29911 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 29970 ||| | ||||| || |||| | | ||||| || | | |||||||| || || || Sbjct 40602215 GATTCTTCTGTCGTCAGGGTGGGTTTTGATGGTATCGATCACTTTTTGCAGTTGGTCAAC 40602156 Query 29971 CCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTG 30030 || || || || |||| | |||||||||||||| Sbjct 40602155 TCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTG 40602096 Query 30031 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30090 ||| || || || || |||| ||| || ||| | ||| ||| ||| |||| Sbjct 40602095 GAAGCCATAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTAGAGAATCCCAGGCCATCCAG 40602036 Query 30091 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 30150 |||||||| ||| || ||||| ||||||||||| || |||||| || || ||||| | Sbjct 40602035 AAAGTCTCGGGATCCATTGGCATCCCAGATCTTCACTCCCTTCGAAGACAGTTCTTTAGC 40601976 Query 30151 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30210 ||||||||| || ||| |||||||||| |||||||| || ||||||| || || Sbjct 40601975 GTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAACACATG 40601916 Query 30211 CTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTCGCCTG 30258 ||||| || || || ||||| | | | |||| ||| | |||||| Sbjct 40601915 TTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTG 40601868 >seq3188 Length=83067054 Score = 158 bits (174), Expect = 1e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 |||||||||| ||| || |||||||||||||| || | ||||||||||||||| || ||| Sbjct 66355481 AGCCCGGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAACGGC 66355422 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || |||| |||||| |||||||| || ||||| ||||| | Sbjct 66355421 ACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTCCACC 66355362 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | ||| || ||||| || || ||||| ||| Sbjct 66355361 ACGTAGAACTGGCAGAGGGCGTGACACGGGGGCAGCGCCATCAGA 66355317 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||| ||| || ||| | ||| ||| Sbjct 66352247 AAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTGGAGAAT 66352188 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| |||| |||||||| ||| || ||||| ||||||||||| || |||||| Sbjct 66352187 CCCAGGCCATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATCTTCACTCCCTTCGAA 66352128 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || | ||||| | ||||||||| || Sbjct 66352127 GACAATTCTTTAGCGTTTGTGGATCC 66352102 >seq233 Length=141296404 Score = 132 bits (146), Expect = 4e-26 Identities = 227/324 (70%), Gaps = 4/324 (1%) Strand=Plus/Plus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 ||||||||| ||| | || || ||||||||| | || || | | ||| | |||| Sbjct 68913438 TGGGAAAGG-TCTTGATTCTTGCTGAAGCTGAATCTTTAGTGGCCCAATGTGATTTAGGT 68913496 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | | || |||| ||||| || | ||||| || | || | ||| || || | ||| | Sbjct 68913497 AAATATGTGCATTTCCCAAAGTATT-ACAAAGTCACTGGGCTTTAGACCAGTAATGTGTG 68913555 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 | |||||||| || || || | |||||||||||||| || ||| || | || |||| Sbjct 68913556 CTATCATGTATGTAAGCAGGGCATAGCTGGCGATGTTGAACTGCATGCCAAAGCCTATGT 68913615 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTC-TCCGTCGCTCACGTAAAACTGACAC 29848 | ||||||| |||||| | ||| || ||||| || || | ||| || ||||| || Sbjct 68913616 CTCCTGACCACTGGTACAAACAGCAGGACAGCTCATCATTCAC-CACATAGAACTGGCAG 68913674 Query 29849 ATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACG 29908 | |||||||||| |||| || | ||| ||| | |||| || |||| ||||||| | Sbjct 68913675 AGGGCATGGCACAGAGGCAGCGACATCAGAGGAAGAACTTTTGGATTCCCAGCACACATG 68913734 Query 29909 ATGATGCGCCTGTCTTCTGGGTTG 29932 ||||| | ||||| | |||||| Sbjct 68913735 ATGATTCTTCTGTCATGAGGGTTG 68913758 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 30021 GCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC-CCTGTGCT--CGAAGC 30077 ||||||||||||| || || || || |||| | ||| ||| ||| || | ||| Sbjct 68914618 GCCTCCACTGGAAGCCATAAACTGGGCCCA---CACCCCGTTCTCCTCTGGTGGAGAACA 68914674 Query 30078 CCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGG 30137 || | | |||||| ||||| ||| | |||||| |||||||| || || ||||| | Sbjct 68914675 CCAGCCTATCCAAAGAGTCTTGGGATCTGTTGGCATCCCAGATTTTCACTCCCTTGGAAG 68914734 Query 30138 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCT 30197 | || ||||| ||||||||| | || ||| || ||||||| |||||||| || ||| Sbjct 68914735 ACAGTTCTTTAGAGTTTGTGAATCCCTTGATAAAGCACAGCAACTCCTCCAAAACACCCT 68914794 Query 30198 TCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30230 |||| || || || ||||| || || || |||| Sbjct 68914795 TCCAGAACACACTTTTGGTTGTCAGCAGAGGAA 68914827 >seq1231 Length=116334831 Score = 100 bits (110), Expect = 2e-16 Identities = 181/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||| ||||| || || || || || || || || || ||||| || | ||||| | Sbjct 6981242 ATGGGCTCCTTGTGGAGGTTCCTTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTT 6981183 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| | |||| ||||| ||||||||||| ||||| || ||||| ||||||| || Sbjct 6981182 TAAAGGTCGACTCTTCTCGGGAATGGAGAACCAGGTCTTCCTGCCCATAATCACCAGATT 6981123 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCA-AGGCTCGAAAGTGTTTAAAATCTTTGC 114440 ||| || ||| | ||||| || | ||||| || |||| | | || || || | Sbjct 6981122 CTGTTTGCCTTCTACTGAAGAGGTGGTGGTCATTTTCTGGAAA-TACCTGAATTCATTCC 6981064 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499 ||| || |||| ||||| || ||||| || || ||||||||| ||||| || Sbjct 6981063 TGAGT------GGGGGCCAGGGCAGGTCCCCGTTCTTGCCAATGCCCATGTTCTGG-GAC 6981011 Query 114500 GCTGCCACGATACCGTTCAG 114519 | || ||||| | |||||| Sbjct 6981010 ACAGCGACGATGCAGTTCAG 6980991 >seq702 Length=116768492 Score = 93.3 bits (102), Expect = 3e-14 Identities = 166/240 (69%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || | || || || || || ||||| || | |||||| | Sbjct 58908486 ATGAGCTCCTTGTGGAGGTTCCTAGAGTTCTCTACTAAGAACTACATTAATTCTGTCTTT 58908545 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| | ||||| ||||||| || Sbjct 58908546 TAAAGGTCAATTCTTCTCAGGAATGGAGAACCAGGTCTTCTTGCCCATAATCACCAGATT 58908605 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 114441 ||| || ||| | ||||| || | ||||| | | || | || || || || | Sbjct 58908606 CTGTTTGCCTTCTACTGAAGAGGTGGTGGTCATTTTTTGGAAATACTTGAATTCATTCCT 58908665 Query 114442 AAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 114499 ||| || |||| || || || ||||| || || ||||||||| ||| |||||| Sbjct 58908666 GAGT------GGGGGCCAGGGGAGGTCCCCGTTCTTGCCAATGCCCATGTTCTGGGACAC 58908719 >seq4546 Length=144923918 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || | || || || || || || || ||||| || | ||||| | Sbjct 48099379 ATGAGCTCCTTGTGGAGCTTCCTTGAGTTCTCTACTAAGAACTACATTAATTCTGTCCTT 48099320 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| || ||||| ||||||| || Sbjct 48099319 TAAAGGTCAATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTGCCCATAATCACCAGATT 48099260 Query 114382 CTGCTTACCT 114391 ||| || ||| Sbjct 48099259 CTGTTTGCCT 48099250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406125193024708