Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3640 352 2e-92 seq4546 114 1e-20 seq1230 104 2e-17 seq1231 89.7 4e-13 >seq3640 Length=31815103 Score = 352 bits (390), Expect = 2e-92 Identities = 606/871 (70%), Gaps = 18/871 (2%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || |||||| ||||| ||| || ||||| ||||| || ||||| | | |||||| ||| Sbjct 24468010 TGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGCAATATTCTCC 24468069 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTA-ATGTTTTTCACACT---TTAGAGCTACAAG 4375 ||||| ||||| ||||| | | || | | || | | || || ||| | ||| Sbjct 24468070 ATAAAGTCAAATGGATTTTCTACTCTGAACACCTTGCTAAAACCCAGTTCCAGC-ATAAG 24468128 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 || |||||| |||||||| || ||||| |||| | ||| || || ||||| | Sbjct 24468129 ---TCTGTCAGCCACAAATTCAATGTACTGCTTCATTAACATGCAATTCATCCCAATGAG 24468185 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 ||||||| | |||| || | ||||| | | ||| | || || | | ||||| Sbjct 24468186 CTTCACAGGCAAGGCGTCAGTGAGGAACTCCTCCTGTATCCTAACAGCATTGATAATTAT 24468245 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555 ||||||| | | | | || ||||||| ||| | || | |||| | || ||||| Sbjct 24468246 TTCTTTTACTCTCTGCTCCGACGGTTTATGTACCAGGTGTTTGAACATCAGGCAGGCAAA 24468305 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCAT 4615 ||||| || ||||| || ||||||||||| ||||| || ||||| || | || ||||| Sbjct 24468306 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCAT 24468365 Query 4616 TAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTC 4675 | |||| || || ||||| ||||| | ||||| || ||||||||||| |||||||| Sbjct 24468366 CAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTC 24468425 Query 4676 TACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATT 4734 || || ||||| ||||| | || || | | ||| ||||||| |||| | Sbjct 24468426 CACTGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCT-CTTTGTCCCCAATCTAAC 24468484 Query 4735 TTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA--- 4791 || ||||| | || || ||||| || || || || || || || || || || | Sbjct 24468485 GCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTAAATGGCATTGAAGAGAT 24468544 Query 4792 ATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCA 4850 ||| |||| || ||| |||| ||| ||||| || || || || |||||||||||| Sbjct 24468545 ATTCCCTTTCTT----TGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCA 24468600 Query 4851 GAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGA 4910 ||||| || ||||| || ||||| || || || || || || | ||| ||||| | ||| Sbjct 24468601 GAATGCATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCCTCTGTAATCTGA 24468660 Query 4911 ACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAA 4970 ||||| | | ||||| || || |||||||| |||||||| || ||||| |||||||| Sbjct 24468661 ACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTAGCTGCAAAG 24468720 Query 4971 AACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGC 5030 || |||| |||||| ||||| || || | || |||||||| || || |||||| | Sbjct 24468721 AAAGCCAGAACATGCGATATGAAATATTTCTCATCAGGCTTCAGAGCTTCCCAGTGCTGA 24468780 Query 5031 AAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTAC 5090 | || || | | ||| || || | | |||||||| || || || ||||| || ||| Sbjct 24468781 ATGTCCTTGGAAAGATCCACCTCCTTGGCCGTCCAAAAGGAAGCCTCAGCTTTCTTATAC 24468840 Query 5091 ATAGACCAAATATCAGGATACTGAATCGGAA 5121 || |||||||||| | || | || |||| Sbjct 24468841 ATTTGCCAAATATCATGGTATTCGATAGGAA 24468871 >seq4546 Length=144923918 Score = 114 bits (126), Expect = 1e-20 Identities = 155/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || || || || ||||| || || | ||||| |||| |||||| || ||||||| | Sbjct 18169973 GTGAAGACAGACATTCAGATAGCTCTTCCTTCTGGGTTTTACGGAAGAGTAGCTCCACGT 18169914 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||||| ||||| | ||||| ||||| || | || || ||||| |||||| ||| ||| Sbjct 18169913 TCTGGCTTGGCTGCCAAACATTTTATAGATATAGGAGCTGGTGTCATAGATGAAGATTAT 18169854 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAA 31948 |||||||| ||||| ||||| ||| ||||||||| ||| || | | || | ||| Sbjct 18169853 AGAGGAAATGTTGGTGTTGTGCTGTCTAATTTTGGCAAAGAGAAGT-TTGAAG--TCAAA 18169797 Query 31949 AAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 || || ||| || | || || || ||||| ||| Sbjct 18169796 AAAGGTGATCGGATTGCGCAGCTCATTTGTGAA 18169764 >seq1230 Length=159902609 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | |||||||| | |||| || || Sbjct 150440335 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 150440394 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| |||||||| || || ||||| ||| Sbjct 150440395 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 150440454 Query 4692 AC 4693 || Sbjct 150440455 AC 150440456 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 4811 GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGC 4870 ||||| ||| ||||| || || || || |||||||||||||||||||| ||||| || || Sbjct 150438693 GTCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 150438752 Query 4871 AATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||| || || || || || || | ||||||||| | |||||||| | | ||||| Sbjct 150438753 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATC 150438808 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||| || | |||||||| | |||| || || Sbjct 150431941 TCATCTCTGCTAATAAGTTCATTG--AAATGTGGAGCCGGGCATCAGTCCTCGTTTCTTG 150431998 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| |||||||| || || ||||| ||| Sbjct 150431999 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 150432058 Query 4692 AC 4693 || Sbjct 150432059 AC 150432060 >seq1231 Length=116334831 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||| ||||| || || | Sbjct 53060393 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCGAAAAAGGCTAAGA 53060449 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| || || | |||||||| |||||||| || | ||| || | Sbjct 53060450 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGTTTATTCCAGTGAGGGAGATCCTTTG 53060509 Query 5041 TTAAATCAAC 5050 ||| || || Sbjct 53060510 ATAAGTCGAC 53060519 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 ||||| || || ||||| || || |||||||| ||||| |||| ||| ||||| |||||| Sbjct 53047892 TGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTGTAAAGAAATGTTTTCC 53047951 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 53047952 ATAAAATCAAAGGGATT 53047968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427009638566774