Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1230 356 2e-93 seq3188 147 2e-30 seq233 105 5e-18 >seq1230 Length=159902609 Score = 356 bits (394), Expect = 2e-93 Identities = 492/687 (72%), Gaps = 1/687 (0%) Strand=Plus/Minus Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164 |||||||| ||| || || | || |||||| |||||||||| || | ||||| |||||| Sbjct 40602514 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGAATCTTCAGCGGCTCGATGTGATTCAGGTA 40602456 Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224 | ||| || ||||||| || || ||||| || || || | |||| ||||| ||| || Sbjct 40602455 AATGTGTGCATCTCCCAAAGTATGAACAAAGTCACCTGGCTTGAGCCGGGTGATGTGCGC 40602396 Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 |||||||||||||| || | ||||||||||||||| || || | || || |||||||| Sbjct 40602395 GATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAATGGCATGCCCAGGCCCATGTC 40602336 Query 27285 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATAT 27344 ||||||| |||||| ||||| || || ||||| || || ||||| ||||| || | Sbjct 40602335 TCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTCCACCACGTAGAACTGGCAGAG 40602276 Query 27345 GGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGAT 27404 | |||| ||||| || || ||||| || | ||||| || ||||| || |||| ||| Sbjct 40602275 GACGTGACACGGGGGCAGCGCCATCAGAGGGAGATCTTTTGGATTCCAAGCACACATGAT 40602216 Query 27405 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 27464 ||| | ||||| || |||| | | ||||| || | | |||||||| || || || Sbjct 40602215 GATTCTTCTGTCGTCAGGGTGGGTTTTGATGGTATCGATCACTTTTTGCAGTTGGTCAAC 40602156 Query 27465 CCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTG 27524 || || || || ||| ||| || |||| || || || ||||||||||| || Sbjct 40602155 TCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCGGCCCCAAAATGCCTCCACTG 40602096 Query 27525 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 27584 ||| || || || || |||| ||| || ||| | ||| ||| ||| |||| Sbjct 40602095 GAAGCCATAAACTGGGCCCAAGTCCCCTTCTCCTCTGGTAGAGAATCCCAGGCCATCCAG 40602036 Query 27585 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 27644 |||||||| ||| || ||||| ||||||||||| || |||||| || || ||||| | Sbjct 40602035 AAAGTCTCGGGATCCATTGGCATCCCAGATCTTCACTCCCTTCGAAGACAGTTCTTTAGC 40601976 Query 27645 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 27704 ||||||||| || ||| |||||||||| |||||||| || ||||||| || || Sbjct 40601975 GTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAACACATG 40601916 Query 27705 CTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACAC 27764 ||||| || || || ||||| | | | |||| ||| | ||||| || ||||| Sbjct 40601915 TTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCAGGCCGAACAC 40601856 Query 27765 GGACAAGACTCCCGTGCCCGTCCTGTC 27791 ||| | || |||||||| | ||| Sbjct 40601855 CTACAGGGTGCCGGTGCCCGTGCGGTC 40601829 >seq3188 Length=83067054 Score = 147 bits (162), Expect = 2e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 |||||||||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 66355481 AGCCCGGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAACGGC 66355422 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| ||||||| |||||| ||||| || || ||||| || || Sbjct 66355421 ACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTCCACC 66355362 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | |||||| ||||| || || ||||| || Sbjct 66355361 ACGTAGAACTGGCAGAGGGCGTGACACGGGGGCAGCGCCATCAG 66355318 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| || || || ||||||||||| ||||| || || || || |||| ||| Sbjct 66352269 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 66352210 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || ||| | ||| ||| ||| |||| |||||||| ||| || ||||| || Sbjct 66352209 CCCTTCTCCTCTGGTGGAGAATCCCAGGCCATCCAGAAAGTCTCGGGATCCATTGGCATC 66352150 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||||||| || |||||| || | ||||| | ||||||||| || Sbjct 66352149 CCAGATCTTCACTCCCTTCGAAGACAATTCTTTAGCGTTTGTGGATCC 66352102 >seq233 Length=141296404 Score = 105 bits (116), Expect = 5e-18 Identities = 221/325 (68%), Gaps = 6/325 (2%) Strand=Plus/Plus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 ||||||||| ||| | || || |||||| |||| || || | | ||||| |||| Sbjct 68913438 TGGGAAAGG-TCTTGATTCTTGCTGAAGCTGAATCTTTAGTGGCCCAATGTGATTTAGGT 68913496 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | || || | ||||| || | ||||| || | || | ||| || || | ||| | Sbjct 68913497 AAATATGTGCATTTCCCAAAGTATT-ACAAAGTCACTGGGCTTTAGACCAGTAATGTGTG 68913555 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | |||||||| || || || | |||||||||||||| || | | || | || |||| Sbjct 68913556 CTATCATGTATGTAAGCAGGGCATAGCTGGCGATGTTGAACTGCATGCCAAAGCCTATGT 68913615 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATA 27343 | || |||| |||||| | || || ||||| ||| || || ||||| || | Sbjct 68913616 CTCCTGACCACTGGTACAAACAGCAGGACAGCTCATCATTCACCACATAGAACTGGCAGA 68913675 Query 27344 TGGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACAC 27401 ||| |||||| |||| || | ||| |||| || |||| || |||| || |||| Sbjct 68913676 GGGCATGGCACAGAGGCAGCGACATCAGAGGAAGAA--CTTTTGGATTCCCAGCACACAT 68913733 Query 27402 GATGATGCGCCTGTCTTCTGGGTTG 27426 |||||| | ||||| | |||||| Sbjct 68913734 GATGATTCTTCTGTCATGAGGGTTG 68913758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369472623132818