Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3640 470 2e-127 seq1230 129 8e-25 seq702 120 4e-22 seq4546 114 2e-20 seq1231 84.2 3e-11 >seq3640 Length=31815103 Score = 470 bits (520), Expect = 2e-127 Identities = 669/939 (71%), Gaps = 7/939 (1%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| |||| ||| || |||| || | |||| ||| ||| | || ||||| ||||| Sbjct 24467943 GTTCATTTAGAAGCCAGCATCCAAGGTAAAAGAATTCTCTATTGGACTTGACATCACTCC 24468002 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 |||| | |||||||| || || | ||||| || || ||||| || ||||||| || || Sbjct 24468003 CATTCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGCAAT 24468062 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGA 47965 ||| |||||||| ||||||||||| || | | | | || |||| || | ||| Sbjct 24468063 ATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAACACCTTGCTAAAACCCAGTTCCAG 24468122 Query 47966 AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT 48025 || ||||| || || || ||||| || || ||||| | |||||||| || || Sbjct 24468123 CATAAGTCTGTCAGCCACAAATTCAATGTACTGCTTCATTAACATGCAATTCATCCCAAT 24468182 Query 48026 AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTAT 48085 || || || || | || || || || ||||| | | || | ||||||| | || Sbjct 24468183 GAGCTTCACAGGCAAGGCGTCAGTGAGGAACTCCTCCTGTATCCTAACAGCATTGATAAT 24468242 Query 48086 TATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGC 48145 ||| | |||| | | ||| ||| || | || ||||| ||||| | || || Sbjct 24468243 TATTTCTTTTACTCTCTGCTCCGACGGTTTATGTACCAGGTGTTTGAACATCAGGCAGGC 24468302 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 ||| ||||| || | ||| |||||||| ||||| | ||| || ||||||||||| || || Sbjct 24468303 AAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGG 24468362 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265 ||| ||||| ||||| |||||||| ||||||| || ||||| ||||||||||| ||||| Sbjct 24468363 CATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCC 24468422 Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCA 48322 ||| || || ||||| || || | ||||| || | || || |||| ||| | Sbjct 24468423 TTCCACTGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCTA 24468482 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 || |||||||| ||||||||||| ||||||||||| |||| || ||||| ||||| Sbjct 24468483 ACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTAAATGGCATTGAAGAG 24468542 Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 | | | |||| ||| |||||||| ||||||||| || | |||||||||||||| || Sbjct 24468543 ATATTCCCTTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGA 24468602 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 || || ||||| || || || || || || || ||||| | || ||||| ||||| || Sbjct 24468603 ATGCATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCCTCTGTAATCTGAAC 24468662 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 || | |||||| || |||| || ||||||||||| ||||||||||| ||||| || Sbjct 24468663 TTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTAGCTGCAAAGAA 24468722 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 || | ||||| || |||||||| || | | |||| | ||||| | || Sbjct 24468723 AGCCAGAACATGCGATATGAAATATTTCTCATCAGGCTTCAGAGCTTCCCAGTGCTGAAT 24468782 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 || || || | ||| || || | || |||||||| || ||||| ||||| |||||||| Sbjct 24468783 GTCCTTGGAAAGATCCACCTCCTTGGCCGTCCAAAAGGAAGCCTCAGCTTTCTTATACAT 24468842 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 | ||| |||||| ||||| ||| || || ||| |||| Sbjct 24468843 TTGCCAAATATCATGGTATTCGATAGGAAAGATAGCAAA 24468881 >seq1230 Length=159902609 Score = 129 bits (142), Expect = 8e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||||||||| |||||||| ||||| ||||| ||| Sbjct 150440335 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 150440394 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||||| || ||||| ||||||||||| |||||||| || || ||||| || Sbjct 150440395 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 150440453 Score = 111 bits (122), Expect = 2e-19 Identities = 112/144 (78%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| |||| |||||| |||| || | |||| ||| ||| | || ||||| ||||| Sbjct 150442371 GTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCC 150442430 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 |||| | |||||||| || || | ||||| || || ||||| || ||||||| ||| || Sbjct 150442431 CATTCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAAT 150442490 Query 47906 ATTTTCCATAAAATCAAATGGATT 47929 ||| |||||||| ||||||||||| Sbjct 150442491 ATTCTCCATAAAGTCAAATGGATT 150442514 Score = 109 bits (120), Expect = 8e-19 Identities = 96/119 (81%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||||| |||||||| ||||| ||||| ||| Sbjct 150431941 TCATCTCTGCTAATAAGTTCATTG--AAATGTGGAGCCGGGCATCAGTCCTCGTTTCTTG 150431998 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||||| || ||||| ||||||||||| |||||||| || || ||||| || Sbjct 150431999 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 150432057 Score = 86.0 bits (94), Expect = 9e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 48391 tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| ||||||| ||||||||| || | |||||||||||||| || || || | Sbjct 150438683 TTTCTTTGGAGTCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGT 150438742 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||| || || || || || || || ||||| | |||||||| ||||| || || Sbjct 150438743 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTC 150438797 >seq702 Length=116768492 Score = 120 bits (132), Expect = 4e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| | |||||||| || ||| Sbjct 56467375 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGGTTG 56467434 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| || | || ||||| || |||||| ||||| | ||| | ||||||| Sbjct 56467435 TATGTTTCAATTGCAGCATCAATGTCTTCTTCATGAATCCCTACGGATACCCTCATCAAC 56467494 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 56467495 ATATGCTGTGGTCTTTCAGCC 56467515 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| ||||| || ||||| || ||||| | || Sbjct 56442966 TGAAATTCTCCTGACAAGACTCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATGGAC 56443025 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 56443026 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGAGCAATAAGTAAACTG 56443085 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 56443086 TTTCTTATACCAT 56443098 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || ||||| | || | ||| Sbjct 56453965 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGT 56454024 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| || ||||| | || || |||||||| || Sbjct 56454025 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCAAGGC 56454084 Query 78123 TCTAGATATATTGC 78136 || || || || || Sbjct 56454085 TCCAGGTAGATAGC 56454098 >seq4546 Length=144923918 Score = 114 bits (126), Expect = 2e-20 Identities = 248/360 (69%), Gaps = 21/360 (6%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 |||||| || ||||| ||| ||| | || || ||||| |||| | | ||| ||||| Sbjct 18169683 TCCAGTAGAACCAAAACCTCCTGAAC-TC-CTGTCAGTGTCATCCAAAACTTGAACTTC- 18169739 Query 45934 TTCAGAT-CAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATT 45992 ||| | | | |||||| | || |||| | | || || || || || | |||||| | || Sbjct 18169740 TTCTGTTTCTGGATAAAAAATCCGTTCACAAATGAGCTGCGCAATCCGATCACCTTTTTT 18169799 Query 45993 TATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATC 46052 | |||||| | ||||| ||| ||| ||| | || |||| | ||||||||||| Sbjct 18169800 GACTTCAAACTTCTCTTTGCCAAAATTAGACAGCACAACACCAACATTTCCTCTATAATC 18169859 Query 46053 TTCATCTATTACTCCCCCTCCCACATCGAT---ACCTTTTAGAGACAGTCCAGATCTAGG 46109 ||||||||| || || |||| | ||| || | ||| || || ||||| | || Sbjct 18169860 TTCATCTATGACACCAGCTCCTATATCTATAAAATGTTTGGCAGCCAAGCCAGAACGTGG 18169919 Query 46110 AGCTATTCTTCCATAA----CAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCA 46165 ||||| |||||| ||| ||||| || | || ||| |||| ||||| || | || Sbjct 18169920 AGCTACTCTTCCGTAAAACCCAGAA----GGAAGAGCTATCTGAATGTCTGTCTTCA-CA 18169974 Query 46166 ATCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGC 46223 | | ||||||||| || || || || || || || |||||||| | ||||| || || Sbjct 18169975 A-CCCCTTTCTCCATAGATGGTATTGTGTAATCATAGGCACTGTACAGGTCATAGCCCGC 18170033 >seq1231 Length=116334831 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 ||||||| |||||||| ||||||||||| || || ||||| ||||| | || |||| Sbjct 53060402 CCAAATTTTCATTTACAATTCCATCACTGGCTGCGAAAAAGGCTAAGATGTGAGAGATAA 53060461 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 48633 |||| || || | || | ||||||||||||| | || ||| ||||||| Sbjct 53060462 AATACTTCTCATCTGATTTAAGTTTATTCCAGTGAGGGAGATCCTTTGATA 53060512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694602129161920