Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3640 459 4e-124 seq702 118 2e-21 seq1230 116 5e-21 seq1231 114 2e-20 seq4546 93.3 6e-14 >seq3640 Length=31815103 Score = 459 bits (508), Expect = 4e-124 Identities = 665/935 (71%), Gaps = 8/935 (1%) Strand=Plus/Plus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 46339 |||| ||| | |||| || | |||| ||| ||| | | |||||| ||||||||| Sbjct 24467948 TTTAGAAGCCAGCATCCAAGGTAAAAGAATTCTCTATTGGACTTGACATCACTCCCATTC 24468007 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 | || ||||| ||||| | ||||| || || ||||| || ||||||| || ||||| | Sbjct 24468008 TCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGCAATATTCT 24468067 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 ||||||| ||||| ||||| || | | | || |||| || | ||| || | Sbjct 24468068 CCATAAAGTCAAATGGATTTTCTACTCTGAACACCTTGCTAAAACCCAGTTCCAGCATAA 24468127 Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTT 46519 |||| || || || ||||| || ||| ||||| | |||||||| || ||||| | Sbjct 24468128 GTCTGTCAGCCACAAATTCAATGTACTGCTTCATTAACATGCAATTCATCCCAATGAGCT 24468187 Query 46520 TGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATA-TTATC 46578 | || || | || || || || ||||| | | || | ||||||| |||| |||| Sbjct 24468188 TCACAGGCAAGGCGTCAGTGAGGAACTCCTCCTGTATCCTAACAGCATT-GATAATTATT 24468246 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 | ||||| | | ||| ||| ||| | || ||||| ||||| | || ||||| Sbjct 24468247 TCTTTTACTCTCTGCTCCGACGGTTTATGTACCAGGTGTTTGAACATCAGGCAGGCAAAG 24468306 Query 46639 TCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATT 46698 ||||| || | || |||||||| ||||| | ||| || ||||||||||| |||||||| Sbjct 24468307 TCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 24468366 Query 46699 AGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 46758 ||||| || || |||||||| ||||| | || ||||| ||||||||||| |||||||| Sbjct 24468367 AGTCCTCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCC 24468426 Query 46759 ACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCCACCTT 46815 || || || || || |||| | ||||| || | || || || | |||| | | Sbjct 24468427 ACTGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCTAACGC 24468486 Query 46816 TGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 46875 |||||||| ||||| ||||| ||||||||||| |||| || ||||| |||||| | Sbjct 24468487 AAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTAAATGGCATTGAAGAGATAT 24468546 Query 46876 tttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGA 46935 | |||| | |||||||| || ||||| || | |||||||||||||| ||||| Sbjct 24468547 TCCCTTTCTTTGGAATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGC 24468606 Query 46936 ATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 |||||||| || || || || || || || ||||| | || || |||||||| || ||| Sbjct 24468607 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGAGCCTCTGTAATCTGAACTTCT 24468666 Query 46996 GTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCC 47055 | |||||| || ||| || ||||| ||||| ||||||||||| ||||| || ||| Sbjct 24468667 TGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTAGCTGCAAAGAAAGCC 24468726 Query 47056 AATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCT 47115 | ||||| || |||||||| ||||| | |||| | ||||| | || || Sbjct 24468727 AGAACATGCGATATGAAATATTTCTCATCAGGCTTCAGAGCTTCCCAGTGCTGAATGTCC 24468786 Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175 || || | ||| || || | || ||||| || || ||||| ||||| |||||||| | | Sbjct 24468787 TTGGAAAGATCCACCTCCTTGGCCGTCCAAAAGGAAGCCTCAGCTTTCTTATACATTTGC 24468846 Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAA 47210 || |||||| | |||| ||| ||||| ||| |||| Sbjct 24468847 CAAATATCATGGTATTCGATAGGAAAGATAGCAAA 24468881 >seq702 Length=116768492 Score = 118 bits (130), Expect = 2e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| ||||| ||||| || ||||| || ||||| | || Sbjct 56442966 TGAAATTCTCCTGACAAGACTCTGCGAGTATAAATGTTGCTGGTGTAAGGTTCAATGGAC 56443025 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| || ||||||||||||||||| ||||| || || | | |||||| Sbjct 56443026 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGAGCAATAAGTAAACTG 56443085 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 56443086 TTTCTTATACCAT 56443098 Score = 111 bits (122), Expect = 2e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || ||||| || || | || Sbjct 56472244 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCAAGATG 56472303 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| |||| || || |||||||||| | Sbjct 56472304 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTAGT 56472363 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 |||| || || || || |||||| ||||| || |||||||||| Sbjct 56472364 TCTACCGTGGTGACGCCACTATATAAGCCTTGGATTACTTTCATGG 56472409 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| |||||||| ||||| | |||||||| || ||| Sbjct 56467375 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAAAGAAGGTTG 56467434 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| | || || || || || |||||| ||||| | || | ||||||| Sbjct 56467435 TATGTTTCAATTGCAGCATCAATGTCTTCTTCATGAATCCCTACGGATACCCTCATCAAC 56467494 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| |||| ||| Sbjct 56467495 ATATGCTGTGGTCTTTC 56467511 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 || || | ||| ||||| || | || | || | || || ||||| || || || | Sbjct 56448863 GAGCCCTGATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCGCAGCTAGCTTCCAGA 56448922 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069 || || |||||||| ||||| || |||| |||||| | ||| || || |||| ||| Sbjct 56448923 GCTCCATAATAAATAGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCA 56448982 Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129 |||||||| | || ||||| ||||| || || || || || ||||| ||||| || Sbjct 56448983 AAAGGATATCTCATCAGGATAAAAGCATCAGCCAGACCTTGTACCCCAATCCCAATGGGG 56449042 Query 76130 CTATGTCTCTTATTGGA 76146 | ||| | ||||| || Sbjct 56449043 CGATGGCGTTTATTTGA 56449059 >seq1230 Length=159902609 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || ||| Sbjct 150440335 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 150440394 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| |||||||| || || || || || Sbjct 150440395 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 150440454 Query 46774 ACAA 46777 |||| Sbjct 150440455 ACAA 150440458 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||||| || ||||| ||||| || || ||| Sbjct 150431941 TCATCTCTGCTAATAAGTTCATTG--AAATGTGGAGCCGGGCATCAGTCCTCGTTTCTTG 150431998 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| |||||||| || || || || || Sbjct 150431999 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 150432058 Query 46774 ACAA 46777 |||| Sbjct 150432059 ACAA 150432062 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 ||||||| || ||||| || | |||||||||||||| ||||| |||||||| || || Sbjct 150438694 TCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 150438753 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || || || || || ||||| | ||||| |||||||| || ||| | |||||| || Sbjct 150438754 ATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 150438812 >seq1231 Length=116334831 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| |||||||| || || | ||| | Sbjct 53055243 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 53055302 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 53055303 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 53055362 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 53055363 CCACTACTCTTTCCCC 53055378 Score = 87.8 bits (96), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| |||||||||||||| || | ||| | ||||||||| ||||| |||||| | Sbjct 53064801 TACCTCTTCTGCTGTCCAGAATGATGCTTGTGCCTGTTTATACATTTTCCAGATATCAGG 53064860 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| ||||| || ||||||| Sbjct 53064861 GTACTGGATTGGAAAGATGACAAATC 53064886 >seq4546 Length=144923918 Score = 93.3 bits (102), Expect = 6e-14 Identities = 209/309 (68%), Gaps = 15/309 (5%) Strand=Plus/Plus Query 44411 TTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATC 44470 ||| ||||| ||| || |||||| | || |||| | | || || || || || | ||| Sbjct 18169731 TTGAACTTCTTCTGTTTCTGGATAAAAAATCCGTTCACAAATGAGCTGCGCAATCCGATC 18169790 Query 44471 ACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCC 44530 |||| | || | || ||| | ||||| ||| ||| || | || |||| || || Sbjct 18169791 ACCTTTTTTGACTTCAAACTTCTCTTTGCCAAAATTAGACAGCACAACACCAACATTTCC 18169850 Query 44531 CCTATAATCTTCATCTATTACTCCACCTCCCACATC---AATACCTTTTAGAGAAAGACC 44587 ||||||||||||||||| || ||| |||| | ||| || | ||| || | || Sbjct 18169851 TCTATAATCTTCATCTATGACACCAGCTCCTATATCTATAAAATGTTTGGCAGCCAAGCC 18169910 Query 44588 CGATCTAGGCGCTATTCTTCCATAA----CAGAATTTTGGCATAGACATACGAATATCTG 44643 || | || |||| |||||| ||| ||||| || | || || |||| |||| Sbjct 18169911 AGAACGTGGAGCTACTCTTCCGTAAAACCCAGAA----GGAAGAGCTATCTGAATGTCTG 18169966 Query 44644 TTTTAATCAACCGTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACTGTATAAATC 44701 | || | ||||| |||||||| || || || || ||||| || |||||||| | || Sbjct 18169967 TCTTCA-CAACC-CCTTTCTCCATAGATGGTATTGTGTAATCATAGGCACTGTACAGGTC 18170024 Query 44702 ATATCCTGC 44710 ||| || || Sbjct 18170025 ATAGCCCGC 18170033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712865976120960