Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq3973 183 4e-41 seq1582 129 8e-25 >seq3973 Length=36798880 Score = 183 bits (202), Expect = 4e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| || | |||||||||||| |||||||| || ||||||||||| Sbjct 11887883 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCGCACACT 11887942 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 | ||| ||||||| |||||||| |||||||||||||| || ||||| ||||| ||||| Sbjct 11887943 CGGTTATGTTCCCGCAGCCAGATGGTGGCGTACATCATTAGGCCAGGCACCAGACCAAAG 11888002 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | ||| || ||| || | | ||||| || ||||| | Sbjct 11888003 ACCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGGATGTGAGGAGGGTACATCATCTCT 11888062 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| ||||||| ||| || ||||| |||| Sbjct 11888063 ACCTGAGTATCTTTGACTGTGGGAGGATACACTTCTCCATCAATTATCT 11888111 Score = 159 bits (176), Expect = 5e-34 Identities = 220/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 8279 TCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGA 8338 || ||||| ||| || | || ||||| ||||| || || | |||| ||||||||| Sbjct 11886153 TCTGGAACGTTGAATGCAGTAAAGGGACAGCCCTTCACATTATTGCAGATGAGAGACTGA 11886212 Query 8339 ATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAG 8398 || | || | |||| ||| || || || ||||| || || ||||| ||||||||| Sbjct 11886213 ATTGAGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTCGGCTTCCAG 11886272 Query 8399 TACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAAC 8458 || | || ||||| ||| | || ||||||| ||||| | |||||| || || || | Sbjct 11886273 TAGTCAGGAGAGCATATGGCATTACCCATGAGTCCTTTCAAGGAGAATGGTGCTCCAACT 11886332 Query 8459 TCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTG 8518 || | ||| | ||||| |||||||||| |||||||||||||| |||| | ||| | Sbjct 11886333 TCCACCATGGTTTCACCAAAGATGGCGTCTGGACGGGGCTTTTCTACCAGCAGGGCGGGG 11886392 Query 8519 TACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTT 8578 || ||||||| ||| || | ||| || || || || | || ||||| || ||||| Sbjct 11886393 TATAGCTCCATAGCATCAATGTCCCCATAGAGTGCTTCCAACTCTGCAGCCATTTCCTTC 11886452 Query 8579 TCTCCTGT 8586 || ||||| Sbjct 11886453 TCACCTGT 11886460 Score = 122 bits (134), Expect = 1e-22 Identities = 121/157 (77%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | ||| Sbjct 11889045 CTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAAA 11889104 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 ||||| || || || || ||| |||| || || ||||| | || |||||||||||||| Sbjct 11889105 AACTGATGGGTAAAGTGCTGGGCAAAGAATGCGAACATCATATTTGTGCCCTGGGGATCA 11889164 Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || |||| | |||| |||||| ||||||||||| Sbjct 11889165 GGGATGAACTTTCTCCTTAGAAGAAATTTTTCCACAA 11889201 Score = 93.3 bits (102), Expect = 6e-14 Identities = 183/266 (69%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | || || |||||||| ||||| ||||| || | |||||||| || || | Sbjct 11887291 CTTACCCTCCCAGCAATTTGTTTGGTGAATGATTCCACAAACTGGGTAAGTCCATGTTCC 11887350 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | || || || ||||| |||| || ||| | |||| || | | |||||| | Sbjct 11887351 AGTAGAATAGAGTTGTTATAGAGAAACTGTTGA--TAGTTGTATTCCTGATCATCAATTT 11887408 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 ||| || ||||||| || | |||||||||||| | |||||||||| | | |||| Sbjct 11887409 GAAAGGCGTCCGGCAGCAGGGGATGCCAGTGATAGAGTGTGTTAAACTCAGCAGCGATAC 11887468 Query 9122 GATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAA 9180 | || ||||||||||| | | ||| ||||| || || | |||| ||| | || Sbjct 11887469 GGTTCTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAG 11887527 Query 9181 TGGTAGCCGCTGAGCTGCTGAACGTA 9206 || ||||| || | ||||| || || Sbjct 11887528 TGATAGCCACTCAAGTGCTGTACATA 11887553 >seq1582 Length=98468360 Score = 129 bits (142), Expect = 8e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 8372 TCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGG 8431 ||||| || || ||||| |||||||||||| | || ||||||||| ||| | | ||| Sbjct 85098348 TCTCCACCAAACGTGCTCGGCTTCCAGTACTCTGGAGAGCAGATGGGATTCCCTAGGAGA 85098289 Query 8432 CCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8491 ||||||||||| || |||||||| | ||| | || ||||| || ||||||| || || Sbjct 85098288 CCTTTGAGGGAAAAGGGAGCCCCAATCTCTATCATACTCTCCCCAAAGATGGAGTCCGGT 85098229 Query 8492 CGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGG 8551 || |||||||| | | || | ||| | ||||| || |||| ||||||||| || Sbjct 85098228 AGGCACTTTTCCAGAAGCAGCCCTGGGTAGAACTCCAAGGCATCGATGTCTCCGTACAGC 85098169 Query 8552 GCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | || || || |||||||| ||||||| Sbjct 85098168 TCCTCCAACTCTGCTGCCATCTCCTTCTCTCCTG 85098135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716807997749120