Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2763 154 4e-32 seq3640 149 2e-30 seq1 149 2e-30 seq233 138 3e-27 seq3972 113 1e-19 seq520 113 1e-19 seq1582 102 2e-16 seq1230 102 2e-16 >seq2763 Length=65901067 Score = 154 bits (170), Expect = 4e-32 Identities = 169/222 (76%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| || ||||| || || || || || || |||||| | |||| Sbjct 60922470 AGGTCAAAATGC---AAATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGG 60922526 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| ||||||||||||| || || ||||| ||||| || ||||| || Sbjct 60922527 TGGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGAT 60922584 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 |||||| |||||||| | || ||||| ||||| || ||||| |||||||| | ||||| Sbjct 60922585 CCCTCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCT 60922644 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | || || ||| |||| ||||| || || ||||| || || Sbjct 60922645 TTCTGACTACAACATCCAGAAAGAGTCGACCCTGCACCTGGT 60922686 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| |||||||| || ||| Sbjct 60922709 CAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 60922766 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||||||||| || || ||||| ||||| || ||||| |||||||| ||||||| Sbjct 60922767 ATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGGATCCCTCCTGACCAGC 60922826 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | |||||| | || || ||| Sbjct 60922827 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACA 60922886 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || || | || ||| Sbjct 60922887 TCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGA 60922927 >seq3640 Length=31815103 Score = 149 bits (164), Expect = 2e-30 Identities = 159/207 (77%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || |||||||||||||||| ||| || | Sbjct 21636359 CAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGG--AGCCCAGCG 21636416 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| |||||| || ||||| ||||| |||||||| || |||| Sbjct 21636417 ACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGATCAGC 21636476 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| ||||||||| | || || | || || ||| Sbjct 21636477 AGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGACGCACCCTCTCTGACTACAACA 21636536 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || ||||| |||| Sbjct 21636537 TCCAGAAAGAGTCCACCCTGCA-CTTG 21636562 >seq1 Length=114275543 Score = 149 bits (164), Expect = 2e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| || ||||||||||| ||||| || || || ||| ||| || Sbjct 8597497 CAGATTTTCGTAAAAACCCTTACAGGAAAAACTATCACTCTTGAAGTTGAACCCTCGGAT 8597556 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || |||||||| ||||| || |||||| Sbjct 8597557 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 8597616 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || || || || || || ||||||||| | ||| | | || || ||| | Sbjct 8597617 AGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGACTACAACATT 8597676 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| |||||||| Sbjct 8597677 CAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 8597711 >seq233 Length=141296404 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| || |||||||| || ||||| || ||||| ||| ||| || Sbjct 109921889 CAGATTTTCGTAAAAACCCTTACAGGAAAGACTATCACTCTGGAGGTCGAACCCTCGGAT 109921830 Query 177984 ACCATCGAGAACGTCAAACAAAAGATT----CAGGACAAAGAAGGAATCCCTCCGGACCA 178039 || || || || || || ||||| ||||| ||||||||||| ||||| || || Sbjct 109921829 ACAATAGAAAATGTAAAGGCCAAGATAAGGCCAGGATAAAGAAGGAATTCCTCCTGATCA 109921770 Query 178040 GCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 |||| |||| || || || || || || || ||||||||| | ||| | | || || || Sbjct 109921769 GCAAAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGTACTTTGTCTGACTACAA 109921710 Query 178100 CGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | | || || || || || || |||||||| |||||||| Sbjct 109921709 CATTCAGAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 109921671 >seq3972 Length=29216678 Score = 113 bits (124), Expect = 1e-19 Identities = 133/178 (75%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 177954 ACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTC 178011 || ||| |||| ||||| || || ||| ||||||||||||| |||||| || || | Sbjct 8003390 ACCATCGCCCTTGAGGTCGA--GCCCAGCGACACCATCGAGAATGTCAAAGCCAAAATCC 8003333 Query 178012 AGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCG 178071 | ||||| || || ||||| || |||||||| || || | || || || |||||||| | Sbjct 8003332 AAGACAAGGAGGGCATCCCACCTGACCAGCAGCGCCTGACATTTGCGGGCAAACAGCTGG 8003273 Query 178072 AAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||||| |||||| | ||||| ||| |||| ||||| || || ||||| || || Sbjct 8003272 AGGATGGCCACACTCTTTCGGATTACAACATCCAGAAAGAGTCCACCCTGCACCTGGT 8003215 >seq520 Length=73916538 Score = 113 bits (124), Expect = 1e-19 Identities = 151/207 (73%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || |||||||||||||| | ||| || | Sbjct 72484320 CAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 72484263 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| ||||| ||||| |||||| || ||||| ||||| || || || || | || Sbjct 72484262 ATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCCCCTGATCCGC 72484203 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 72484202 AGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAACA 72484143 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || |||| |||| Sbjct 72484142 TCCAGAAAGAGTCCACCATGCA-CTTG 72484117 >seq1582 Length=98468360 Score = 102 bits (112), Expect = 2e-16 Identities = 150/208 (72%), Gaps = 7/208 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||| ||||| | || || || || || |||||||| ||||| | | ||| Sbjct 98015848 CAGATTTT-GTGAAGTCCCTGACGGGCAAGACCATCACCCTTGAGGTCCA---CCCAGTG 98015903 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| |||||| || || || || || || || | ||| | ||||||| Sbjct 98015904 ACACCATCGAGAATGTCAAAGTCAAAATCCAAGATAAGGAGGGCA-CCCACTTGACCAGC 98015962 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || || || || |||||||| || ||||| | |||||| || |||| ||| Sbjct 98015963 AGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTTTCCAATTACAACA 98016022 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || || || || ||||| || || Sbjct 98016023 TTCAGAAGGAGTCCACCCTGCACCTGGT 98016050 >seq1230 Length=159902609 Score = 102 bits (112), Expect = 2e-16 Identities = 152/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||| ||||| || | || || | | || ||| |||| ||| |||||| Sbjct 126082905 CAGATTTTCAAAAAAACCCTAATGGGGAAGATCACTACTCTCAAGGTTGAACCCTCAGAT 126082846 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || | || ||||||||||| || ||| ||| ||| || |||||| Sbjct 126082845 ACAACAGAAAATTTAAAGGCCAAGATTCAGGATAAGGAAAAAATTCCT---GAGCAGCAA 126082789 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || ||||| || || || ||||||||||| | | | | || || ||| | Sbjct 126082788 AGACTGATTTTTGCCGGCAAGCAACTGGAAGATGGAAGTAGTTTATCTGACTACAACATT 126082729 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || ||||||||||| |||||||| Sbjct 126082728 CAAAAGGAGTCCACTCTGCATCTTGTGTTGAGACT 126082694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203612783695532