Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microcebus_20murinus_20[refseq_20GCF_5F000165445.2_202017-02-06] 7,678 sequences; 2,487,409,138 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3640 116 3e-21 seq2763 111 1e-19 seq520 102 8e-17 seq1582 98.7 9e-16 seq3398 89.7 5e-13 seq4347 87.8 2e-12 >seq3640 Length=31815103 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| ||| ||||| ||||| ||||| ||||||||||| | || || Sbjct 21636564 ACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCC 21636505 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| ||||| || ||||| | ||| || || | || | || |||||||| | Sbjct 21636504 AGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGG 21636445 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || ||| ||| | | | |||||||| | ||||||||| | || || || || Sbjct 21636444 ATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTG 21636385 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| || || |||||||| Sbjct 21636384 CCGGTCAGGGTCTTCACAAAGATCTGCAT 21636356 >seq2763 Length=65901067 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||| ||||| ||||| ||||| || || ||||| | || || Sbjct 60923142 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 60923083 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||| || || || || | ||| ||||| | |||| | || ||||| ||| Sbjct 60923082 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCT-TCCTTATCCTG 60923024 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||| || ||||| | | || || || | ||||||||||| || || || || Sbjct 60923023 GATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAAGGTGATGGTCTT 60922964 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| |||||||||||||| Sbjct 60922963 GCCGGTCAGGGTCTTGACGAAAATCTGCAT 60922934 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||| ||||| ||||| ||||| || || ||||| | || || Sbjct 60922686 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 60922627 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||||||||| || || || | ||| ||||| | |||| | || ||||| ||| Sbjct 60922626 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCT-TCCTTATCCTG 60922568 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||| || ||||| | | ||||| || | ||||||||||| || || || || Sbjct 60922567 GATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTT 60922508 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| ||||| || || || ||||| || Sbjct 60922507 GCCGGTCAGGGTCTTCACAAAGATTTGCATTTT 60922475 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||| ||||| ||||| ||||| || || ||||| | || || Sbjct 60922914 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 60922855 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||| || || || || | ||| ||||| | |||| | || ||||| ||| Sbjct 60922854 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATCCCT-TCCTTATCCTG 60922796 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||| || ||||| | | || || || | ||||||||||| || || || || Sbjct 60922795 GATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTT 60922736 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| || || |||||||| Sbjct 60922735 GCCGGTCAGGGTCTTCACAAAGATCTGCAT 60922706 >seq520 Length=73916538 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| |||| ||| ||| ||||| ||||| ||||| |||||||||||| | || || Sbjct 72484115 ACCAAGTGCATGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCC 72484174 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || || || ||||| | ||| | || | ||||| || |||||||| | Sbjct 72484175 AGCTGCTTCCCAGCAAAGATCAGCCTCTGCGGATCAGGGGGAATGCCTTCCTTGTCTTGG 72484234 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || ||| ||| | | | || || || | ||| ||||| | || || || || Sbjct 72484235 ATCTTTGCCTTGACATTCTCAATGGTATCACTGGGCTCAACCTCGAGGGTGATGGTCTTG 72484294 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| || || |||||||| Sbjct 72484295 CCGGTCAGGGTCTTCACAAAGATCTGCAT 72484323 >seq1582 Length=98468360 Score = 98.7 bits (108), Expect = 9e-16 Identities = 156/219 (71%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||| ||||| ||| ||||||||||||||| || | ||| || ||||| Sbjct 98016059 AGACGAAGCACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAATTGGAAAGAGTGCGG 98016000 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTC 41763 | || || ||||| ||||| || |||||||| ||||| ||||| | ||| || ||| Sbjct 98015999 CCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAAGTGGG--TGCCCTC 98015942 Query 41764 CTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 ||| || |||||| || | | | ||||| || | | ||||| | || Sbjct 98015941 CTTATCTTGGATTTTGACTTTGACATTCTCGATGGTGTCACT-GGGTGGACCTCAAGGGT 98015883 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || |||||||| | ||| || ||||||||||| Sbjct 98015882 GATGGTCTTGCCCGTCAGGGACTTCAC-AAAATCTGCAT 98015845 >seq3398 Length=72247402 Score = 89.7 bits (98), Expect = 5e-13 Identities = 143/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||| ||||| ||||| ||||| || || ||||| | || || Sbjct 1977492 ACCAGGTGCAGGGTCGACTCGTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 1977433 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||| || || || || | ||| ||||| | ||| | || ||||| || Sbjct 1977432 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGGTCCCT-TCCTTACCCTG 1977374 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||| || ||||| | ||||| || | ||||||||||| || || || || Sbjct 1977373 GATCTTGGCCTTCACATTCTCAGTGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 1977314 Query 41833 ACCCGTCAGCGTCTTTACGAAAA 41855 || ||||| ||||| ||||||| Sbjct 1977313 GCCGGTCAGGGTCTTGACGAAAA 1977291 >seq4347 Length=47401472 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 |||| | |||||| ||||| ||| ||||||||| |||||||||||||| |||||| || Sbjct 19988754 AGACAGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAGGGTGTGC 19988813 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || | ||||||| || || || ||||| | ||| || | || ||| | || ||| Sbjct 19988814 CCATCTTTCAGCTGCTCCCCAGCAAAGATCAGCCTCTGCTGAT-CGGGGGGATGCCTTCC 19988872 Query 41765 TTGTC 41769 ||||| Sbjct 19988873 TTGTC 19988877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462259630373600