Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasalis_20larvatus_20[genbank_20GCA_5F000772465.1_202014-11-10] 319,549 sequences; 3,011,966,170 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq15 286 4e-72 seq216842 223 4e-53 seq18533 183 4e-41 seq77753 129 7e-25 >seq15 Length=160576332 Score = 286 bits (316), Expect = 4e-72 Identities = 253/317 (80%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| | ||||||||| | Sbjct 20365658 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGNCTGTACCTGNGT 20365599 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||||| |||||| ||||||||||||||||||||| || ||||||||| Sbjct 20365598 ACGGGCACACCGTCAGGGCCCACCNGGAACTTCTCGAAGTTCCAGGCAACATCGTTGCGG 20365539 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| |||| || ||||||| ||| ||||| | |||||||| Sbjct 20365538 CACACCGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGCTG 20365479 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||||||||| || |||||||||||||| || || ||| ||||||| ||| Sbjct 20365478 GGGGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCACCCCCACACCGTTCACC 20365419 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 || ||||||||||||||||| ||||| |||| ||| || ||||| ||||||| ||| Sbjct 20365418 TCCCACTTCTCGAAGAGCATGAAGTTGGGCTTGAACCCACCACCAGGTCGGACGTACTTG 20365359 Query 83357 AGGGAAGGCAAGATCTC 83373 |||||| || ||||| Sbjct 20365358 AGGGAATTCAGAATCTC 20365342 >seq216842 Length=476 Score = 223 bits (246), Expect = 4e-53 Identities = 189/233 (81%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||||| || |||| Sbjct 411 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACCACCAGGCCCCGAGGCCCAAGGC 352 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||| | Sbjct 351 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGGGACGCCA 292 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | |||||||| || | ||| |||||| | | |||| | ||||||||| || || |||| Sbjct 291 CATTCTCGATAAGTAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACAGGCTCCCCGCCGG 232 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAGC 83623 | |||||| || |||||||||||||| || || | ||||||| || ||| Sbjct 231 CCAGCGGGCGCGCCGAGAAGGCGTACACCGACTGGGCCGCTGCCGCCGCTAGC 179 >seq18533 Length=1786 Score = 183 bits (202), Expect = 4e-41 Identities = 185/238 (78%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 83406 GGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGT 83465 |||| |||||||| || ||||| |||||||| | || || ||||||||||||||||||| Sbjct 1786 GGTTGCACGGGAAGCCGAGCACCACCAGCCCGGG-GC-CCAAGGCGCCGCTGCAGCTCGT 1729 Query 83466 TCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCA 83525 ||||||| ||||| |||||||||||| | |||||||||||||| || ||||| || || | Sbjct 1728 TCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGGGACGCCACATTCTCCATAAGTA 1669 Query 83526 AGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTG 83585 ||| |||||| | |||| | ||||||||| || || |||| |||||| || | Sbjct 1668 GCACCTTGCCCCGCAGTGAGCCCAGGCTCACAGGCTCCCCGCCGGCCGGCGGGCGCGCCG 1609 Query 83586 AGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCGCGTACTTGGCACA 83643 ||||||| ||||| || || | ||||||| || ||| | || || || |||| || Sbjct 1608 AGAAGGCATACACTGACTGGGCCGCTGCCGCCGCTAGCCGAGCAGCACACATGGCGCA 1551 >seq77753 Length=1172 Score = 129 bits (142), Expect = 7e-25 Identities = 208/291 (71%), Gaps = 15/291 (5%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 489 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 547 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 548 TGGTGCACCTGTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 607 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || || ||| ||| | | |||| ||||| Sbjct 608 GCGGCTCCCTGGGCAAGAAGCAG-CTGGATCCGTCCCGCATCAAGCTCATCCGCCACTAC 666 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGC----AACGAGCGCGTGTGGATCACAAAGTTCCT 50643 |||||| |||| ||||| ||||| ||||| ||||| |||| | ||||| | Sbjct 667 GTGCAGCTGCTCTACCCG----CGCGCCAAAAACGACCGCGTCTGGACCCTGGAGTTCGT 722 Query 50644 GGCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 || ||||| ||||||||||||||||| | |||||| || |||||| Sbjct 723 GGGCAAACTGGATGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606365044891960