Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasalis_20larvatus_20[genbank_20GCA_5F000772465.1_202014-11-10] 319,549 sequences; 3,011,966,170 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq10 138 1e-27 seq12 104 2e-17 seq5 82.4 7e-11 >seq10 Length=67975966 Score = 138 bits (152), Expect = 1e-27 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| || |||| ||||| || |||||||||||||||||||| || | Sbjct 12442645 TCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAG 12442704 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | || |||||||||||||||||||||||||| | Sbjct 12442705 GCACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCA 12442764 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || ||||| || | | || || ||||| || |||||| Sbjct 12442765 CCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATC 12442808 >seq12 Length=181502896 Score = 104 bits (114), Expect = 2e-17 Identities = 191/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || |||| || ||||| || ||||| || || ||||| | | Sbjct 13887794 TTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGT 13887853 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 | |||||| | || | ||||||||| | | ||| || ||||| ||||| ||||| Sbjct 13887854 TNTCTGCTGAGAACTAAATTAATTCTANCCTTNAAAGGTCGATTCTTCTCAGGAATGGAG 13887913 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | |||||||| |||| ||||| || |||| | || || | | | Sbjct 13887914 AACCAGGTCTACCTACCCATAATCACCAGATTCTGTTTACCTTCTACTGAAGAAGGTGTG 13887973 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTT 3202 |||||| |||| |||||| | | ||| || || || ||||| |||| || || Sbjct 13887974 GTCATTCTCTGGAAATACCTGAATTCATTCCTGAGCGGAGGCCAGGGCAGGTCCCCATTC 13888033 Query 3203 TTACCAATTCCTAATTGTTCATCAACTGCAACGATGCAGTT 3243 || ||||| || | | || || || ||||||||||| Sbjct 13888034 TTGCCAATGCCCATGTTTTGGGACACAGCGACGATGCAGTT 13888074 >seq5 Length=126811233 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || | ||||||||||||| | |||||| || || ||||| | ||| Sbjct 76485469 TCTCTGCTGAGAACTAAATTAATTCTGTTCTTTAAAGGGCGATTTTTCTCAGGAAGGGAG 76485410 Query 3083 AACCATGTTCTT-TTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGA 3141 ||||| | |||| | |||||||| |||| ||||| || |||| | | || | || | Sbjct 76485409 AACCA-GATCTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTGCTGAAGAGGTTGT 76485351 Query 3142 CGTCATTTTCTGAAAATAC 3160 |||||| |||| |||||| Sbjct 76485350 GGTCATTCTCTGGAAATAC 76485332 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || | ||||||||||||| | |||||| || || ||||| | ||| Sbjct 76491031 TCTCTGCTGAGAACTAAATTAATTCTGTTCTTTAAAGGGCGATTTTTCTCAGGAAGGGAG 76490972 Query 3083 AACCATGTTCTT-TTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGA 3141 ||||| | |||| | |||||||| |||| ||||| || |||| | | || | || | Sbjct 76490971 AACCA-GATCTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTGCTGAAGAGGTTGT 76490913 Query 3142 CGTCATTTTCTGAAAATAC 3160 |||||| |||| |||||| Sbjct 76490912 GGTCATTCTCTGGAAATAC 76490894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426110024897520