Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasalis_20larvatus_20[genbank_20GCA_5F000772465.1_202014-11-10] 319,549 sequences; 3,011,966,170 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq21 100 2e-16 >seq21 Length=146407008 Score = 100 bits (110), Expect = 2e-16 Identities = 125/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 22752 CTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAA 22811 |||||| || | |||||| || |||||||| | ||||| | ||||||||||| || Sbjct 40657366 CTTTGCTGCAGCGGAAGGCATC---TTTTCTGGTTATTTTGCATCGATATTCTGGCTCAA 40657310 Query 22812 GAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGG 22871 |||||| || ||||| || | | |||||||| || | |||||| | || || || Sbjct 40657309 GAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGATGAGGG 40657250 Query 22872 TCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 | |||||||||| |||||||| || |||| | || ||| | ||||||| Sbjct 40657249 TTTACACTGTGATTTTGCTTGCCTGATGTTCAAACACCTGGTACACAAACC 40657199 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 22777 TTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTG 22836 |||||||| || ||||| ||||||||||| |||||||| || ||||| || | Sbjct 135420534 TTTTCTGGTTCTTTTGCACTGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTC 135420593 Query 22837 GCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892 | |||||||| || | |||||| |||| || ||| |||||||| |||||||||| Sbjct 135420594 ACATTTTCCAATGAACTTATTAGCAGTGATGAGGGTTTACACTGTTACTTTGCTTG 135420649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354846247020247