Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasalis_20larvatus_20[genbank_20GCA_5F000772465.1_202014-11-10] 319,549 sequences; 3,011,966,170 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq21 266 3e-66 seq5 120 3e-22 >seq21 Length=146407008 Score = 266 bits (294), Expect = 3e-66 Identities = 500/730 (68%), Gaps = 20/730 (3%) Strand=Plus/Plus Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631 || ||||| | ||||| || || ||||| || ||||||||||| || ||| |||| Sbjct 40656936 ACTCCCATCCTCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGT 40656990 Query 13632 GATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGT 13691 || ||||| |||||||| |||||||| || | | || || || | |||| ||| Sbjct 40656991 GAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGT 40657050 Query 13692 TCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13751 || | | ||| || || | ||||||||| ||||| ||||| | |||||||| Sbjct 40657051 TCCAGCATG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATC 40657108 Query 13752 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCT 13811 || || | || ||||| | | || | |||| | |||||| ||||| | Sbjct 40657109 CCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAATTTCTGTTCTATCCGAACAGCAT-- 40657166 Query 13812 TTTATAATAATTG-TAATAATCTC-ATTAGAAGGAGGATATTTTA---GATGTTTAAAAA 13866 | ||||| ||| | || |||| | | | | || | | || | ||||| || | Sbjct 40657167 -TGATAATTATTTCTCTTACTCTCTACTCCA--GTGGTTTGTGTACCAGGTGTTTGAACA 40657223 Query 13867 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 13926 | | || ||||||||||| || | ||||||||||| ||||||||||| || ||||||| Sbjct 40657224 TCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATG 40657283 Query 13927 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAA 13986 | | || ||||||| ||||||||| || | ||| ||||| | ||||| | || |||| Sbjct 40657284 TGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAA 40657343 Query 13987 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14046 ||| | || || |||||||||| ||| | ||||| ||| | | || | ||||| Sbjct 40657344 AGA---TGCCTTCCGCTGCAGCAAAGACTACAACACGTTCACCACAGGTAGCNTCTTTGT 40657400 Query 14047 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106 | ||||| ||||| || | || || || | | || ||| |||||||| | Sbjct 40657401 CCCCAATCCAGNGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGG 40657460 Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 |||| | | | ||||| | ||||| | | | ||||| || || |||| || |||| Sbjct 40657461 CATTGAGGAGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCTGTAAGGAAACTAT 40657520 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 |||||||||| ||||||||||| || || || || || ||| | || || | ||||| | Sbjct 40657521 ACATTTCAGAATGTATGTTTTCNATGGCAATTTGGAAGCCANAGAAACAGCGGGCTTCTG 40657580 Query 14227 ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286 | || ||||| | ||||| || |||| |||||||| ||||| |||||||| | Sbjct 40657581 TCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTG 40657640 Query 14287 CTGCAAAAAA 14296 ||||||| || Sbjct 40657641 CTGCAAAGAA 40657650 Score = 165 bits (182), Expect = 8e-36 Identities = 298/431 (69%), Gaps = 5/431 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| | ||| || | |||||||| || ||||||||||| || |||||||| | Sbjct 135420649 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 135420590 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||||| ||||||||| || | ||| ||||| ||||| || || |||||| | Sbjct 135420589 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 135420530 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 | | || ||| ||||||||| | ||||||||| | | | ||||||| Sbjct 135420529 GTGCTTTCCACTAGGGCAAACGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 135420470 Query 14052 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 ||||| | | || |||| | | || || || | | | |||||||||||| ||||| Sbjct 135420469 ATCCA-ATACAAGACCCAAACTGCCTTCTTCTTGA-CACAGGCATTGTTTCAATGGCATT 135420412 Query 14111 AAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 || | | ||||| | ||||| || | |||| ||| |||||||| | ||| || Sbjct 135420411 GAAGAGAAATTCCCTTTCTTTGTTATCTTTAATG--TGTGTCAATAAGGAGATTATTTAT 135420354 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230 ||||| ||||||||||| ||||| | || || ||||| ||||| | ||| | Sbjct 135420353 GTCAGAATGTATGTTTTCTATAGCAGTTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAAT 135420294 Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 || | ||| |||| ||| |||| ||||||| ||||| ||||||| ||||| Sbjct 135420293 CTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGC 135420234 Query 14291 AAAAAATGCCA 14301 ||| || |||| Sbjct 135420233 AAAGAAAGCCA 135420223 >seq5 Length=126811233 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || |||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 9677574 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 9677515 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || ||||||||||| || || || ||||||||||| | Sbjct 9677514 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 9677455 Query 14014 CTATTAATCGTTCTCC 14029 ||| | ||||| || Sbjct 9677454 CTACGACACGTTCACC 9677439 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 9679727 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 9679669 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 9679668 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 9679609 Query 13643 CATAAAATCAAATGGATT 13660 |||||| |||||||| || Sbjct 9679608 CATAAAGTCAAATGGGTT 9679591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477811792466600