Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasalis_20larvatus_20[genbank_20GCA_5F000772465.1_202014-11-10] 319,549 sequences; 3,011,966,170 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq21 208 8e-49 seq19 95.1 1e-14 seq5 87.8 2e-12 >seq21 Length=146407008 Score = 208 bits (230), Expect = 8e-49 Identities = 533/810 (66%), Gaps = 20/810 (2%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | |||||| | |||| Sbjct 40656882 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCC 40656941 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || || ||||| || || || || || ||||||| | ||| ||| Sbjct 40656942 ATCCTCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATA 40656996 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||||| |||||||| || || | | || | || || |||||||||| | Sbjct 40656997 TTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCC-AG 40657055 Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 || ||| ||||| ||||| || || ||||| ||||| |||||||| || || Sbjct 40657056 CATG-TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATA 40657114 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421 || ||||| | || | || | || | |||||| || || | | |||| Sbjct 40657115 GGCTTCACAGGCAAGGCCTCAGTGAGGAATTTCTGTTCTATCCGAACAGCATTGATAATT 40657174 Query 21422 ATATTTATTATCCTAGATGTACT--AGGGGGATAC--AATAATTGTTTAAACATCAAACA 21477 || | | ||| || |||| || || | | | ||||| ||||||| || Sbjct 40657175 ATTTCTCTTACTCTC----TACTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCA 40657230 Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 ||||||||||| || ||||| ||||| || || || | |||||| |||||||| | || Sbjct 40657231 AGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCC 40657290 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAAT 21597 ||||| | ||||| || || | ||| ||||| || ||||| || |||||| || Sbjct 40657291 AGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---AT 40657347 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATAT 21657 ||| || | |||||||| | || | |||||||| | |||| ||||| ||| || Sbjct 40657348 GCCTTCCGCTGCAGCAAAGACTACAACACGTTCACCACAGGTAGCNTCTTTGTCCCCAAT 40657407 Query 21658 CCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA 21717 ||| ||||| | |||||| | || | |||| || || ||||| || || | Sbjct 40657408 CCAGNGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAG 40657467 Query 21718 AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTC 21777 ||| | |||| | ||| ||||| |||||||||||| Sbjct 40657468 GAGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCTGTAAGGAAACTATACATTTC 40657527 Query 21778 AGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT-T 21836 ||||||||| ||||| || || || || || || | ||||| | || |||| ||| | Sbjct 40657528 AGAATGTATGTTTTCNATGGCAATTTGGAAGCCANAGAAACAGCGGGCTTCTG-TCATCT 40657586 Query 21837 GAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAA 21896 |||| || |||||| | ||||||||||||||||||| |||||||| || |||| Sbjct 40657587 GAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAA 40657646 Query 21897 AAAATGCCAATATATTTTTTATAAAATATC 21926 | || ||| | || |||||||| || Sbjct 40657647 AGAAAACCAGAACATGGGATATAAAATCTC 40657676 >seq19 Length=137426304 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 21100 TTTATTCAGCTTTATAAAAATAT-TTATTTAAAAATCAGCATCTAATGAGAAAACATTAT 21158 ||||| || |||| || || | || |||||||||| ||||| || | ||| | |||| Sbjct 118922303 TTTATAGAGTTTTAAAACAAGAGGTTTTTTAAAAATCTGCATCCAAGGTGAAGATGTTAT 118922244 Query 21159 CTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAAT 21218 || ||| || ||||| | | | ||||| || ||||| ||| || || |||| Sbjct 118922243 CTGTGGTTTCTGCCATAACTGCAAAACGCTGATACTCCGAAACTCGTTTCTCAAAGAAAT 118922184 Query 21219 TTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 |||| |||||||| || || || ||||||||||||||| |||||||| Sbjct 118922183 TTGTTTTTCCTTCTAAAGAAATGTTTTCCATAAAATCAAAAGGATTTTC 118922135 >seq5 Length=126811233 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 9679733 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 9679674 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 9679673 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 9679614 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||| || || Sbjct 9679613 TTCTCCATAAAGTCAAATGGGTTCTC 9679588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529776195390760