Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasalis_20larvatus_20[genbank_20GCA_5F000772465.1_202014-11-10] 319,549 sequences; 3,011,966,170 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq5 122 8e-23 >seq5 Length=126811233 Score = 122 bits (134), Expect = 8e-23 Identities = 209/297 (70%), Gaps = 10/297 (3%) Strand=Plus/Minus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 |||||||||||||| ||||||||||||||||| ||||| |||||| ||| | | || Sbjct 9985069 TTTATGTATTATGTGAATGATGGCGTCTATGGATCATTTAATTGCATACTATATGATCAC 9985010 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAAAGAAAAACGC---CTTGAAGACAAAGACTATGTT 21121 || | | | ||| | |||| |||| | || | || || || | ||| Sbjct 9985009 GCACATGTAAAGCCCCTTCTGC---AAGAGAGACCTAAACCAGATGAGAAGTATTATTCA 9984953 Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || |||||| | ||| | ||||| |||| ||||| ||| Sbjct 9984952 TCCAGCATATGGGGACCAACATGTGATGGCCTTGATCGGATTGTGGAGCGCTGTGACCTG 9984893 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || || | || ||||| || ||| | | |||||||||||||||||||||| || | Sbjct 9984892 CCTGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACA-CTGTTGC 9984834 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTCAG 21296 ||| | || || || || ||||| ||| || | || | | ||||||| || |||| Sbjct 9984833 TGCTGCCTCTACGTTCAATGGCTT-CCAGAGGCCGACGATCTACTATGTGATGTCAG 9984778 Score = 118 bits (130), Expect = 1e-21 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 |||||||||||||| ||||||||||||||||| ||||| |||||| ||| | | || Sbjct 58575538 TTTATGTATTATGTGAATGATGGCGTCTATGGATCATTTAATTGCATACTATATGATCAC 58575597 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAAAGAAAAACGC---CTTGAAGACAAAGACTATGTT 21121 || | | | ||| | |||| |||| | || | || || || | ||| Sbjct 58575598 GCACATGTAAAGCCCCTTCTGC---AAGAGAGACCTAAACCAGATGAGAAGTATTATTCA 58575654 Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || |||||| | ||| | ||||| |||| ||||| ||| Sbjct 58575655 TCCAGCATATGGGGACCAACATGTGATGGCCTTGATCGGATTGTGGAGCGCTGTGACCTG 58575714 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 || || | || ||||| || ||| | | |||||||||||||||||||||| Sbjct 58575715 CCTGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACA 58575766 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 20372 GAGATTCAGTTACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCT 20431 || || ||||| |||| | |||||| || | |||| ||||| | | ||| |||||| Sbjct 9987365 GAAATACAGTTGGTGCAGAGTCTGGGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCT 9987306 Query 20432 TGTAAGCAGCCTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTT 20491 ||||| || || || || | |||||| ||| | | |||||| | ||||||||||| Sbjct 9987305 TGTAAACAAGTATCTCAAATTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTT 9987246 Query 20492 GATAGTGAAGAAGAGCTTACCAAAATTG 20519 |||||||||| ||| | | ||| ||| Sbjct 9987245 GATAGTGAAGTTGAGTTGATGAAAGTTG 9987218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461694030838320