Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasalis_20larvatus_20[genbank_20GCA_5F000772465.1_202014-11-10] 319,549 sequences; 3,011,966,170 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq10 165 7e-36 >seq10 Length=67975966 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || ||||||||||||||||| ||||| || || |||||||| ||||| |||| ||| Sbjct 12442659 TGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACACCTAGGCCC 12442718 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||||| || || ||||||||||||||||| | ||| | || ||||| ||| Sbjct 12442719 ATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACCACATAGAACTGG 12442778 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || || ||||||||||| ||||| Sbjct 12442779 CAGAGGGCATGGCATGGAGGCAGTGCCATCAGAGGAAGATC 12442819 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| || || || ||||| |||||||||| ||||| || | ||| Sbjct 12442819 GATCTTCCTCTGATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAAC 12442760 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 | ||||||||||||||||| || || |||||||||||||||| |||| ||||| ||| Sbjct 12442759 AGTGAGCTGTCCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGTGTGCCTTTC 12442700 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| ||||||||||||||||| || || Sbjct 12442699 AACATCGCCAGCTACGCCCTGCTCACGTACATGATTGCGCA 12442659 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || || |||||||| || || || Sbjct 12446847 TATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCT 12446906 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||||||| | |||||| ||||||||| || || | || |||||||| ||| Sbjct 12446907 CTGGTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTC 12446966 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || ||||| || | || |||| Sbjct 12446967 ACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGG 12447000 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || ||||| || ||| ||| ||||| |||||||| || | || || | Sbjct 12447000 CCACAAATGCTAAAGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGATCCC 12446941 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||||||| |||||| | ||||||| | | | || || || |||||||| || || | Sbjct 12446940 GAGACTTTTTGGACAGCCTGGGGTTCTCCACCAGAGAAGAAGGGGACTTGGGTCCAGTTT 12446881 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || ||||||||||| || |||||||| || || Sbjct 12446880 ATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATA 12446847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446471877479280