Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1724 237 2e-57 seq1685 224 1e-53 seq1162 102 8e-17 seq1399 98.7 1e-15 >seq1724 Length=455154 Score = 237 bits (262), Expect = 2e-57 Identities = 577/857 (67%), Gaps = 24/857 (3%) Strand=Plus/Plus Query 15935 TCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA-GGGATTAGT 15993 || ||||||||||| |||| | || ||||| |||||||| ||||| ||| | | Sbjct 265445 TCAAAGAAGTTAGTCTTTCAGT-----GAAATATTCTCCATAAAGTCAAATGGGCTCTCT 265499 Query 15994 AGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAA-TCTATCTGCTACAAATTCTA 16052 | | ||| | |||| | ||||||||| |||| ||| |||| ||||| || | Sbjct 265500 ACCCCGAAA-ACCTTACTAAAACCCAGTTCCAGC-CTAAGTCTGCCTGCCACAAACTCAA 265557 Query 16053 TATATTGACACATTA-AGTCGCAATTAATTCCTATAAG--TCGTACCGGAAGAGCTTTTG 16109 | |||| ||||| ||| |||||| || || || || || || | ||| || | | Sbjct 265558 TGCATTGCTTCATTAGAGT-GCAATTCATCCCAATGAGCTTCATAG-GCAAG-GCCTCAG 265614 Query 16110 TTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAG 16169 | | |||| ||||||||| ||| || | |||| | || | ||| || | Sbjct 265615 TGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTGTTTCTCTCACTCTCTCCTCCG 265674 Query 16170 ACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGT 16229 | ||| | || |||| ||| ||||| | || || || || || |||| || || | Sbjct 265675 ATGGTTTGTGCACCAGGTATTTGAACATCAAGCA-GCAAAATCACAGTGTAAACCCTCAT 265733 Query 16230 CTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACC 16289 ||||||| |||||||| || ||||| || | || ||||| |||||||||||| | || Sbjct 265734 CTCTGCTAATAAGTTCATTCGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCC 265793 Query 16290 AGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTA 16349 | ||||||| ||||| || || |||||||| || || || || | ||||| || | | Sbjct 265794 ACAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCTACAA 265853 Query 16350 ATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTT 16409 ||||| | || |||| ||||| | | |||||| | | || || || || | Sbjct 265854 CACGTTCACCATAGATAGCCTCTTTGTCCCCAATCCAGCACAAGGCTCAATCTGCGTTCT 265913 Query 16410 GTTTTATACAATCCATCGTTTCTATGGCCTTAAACA--ATTTCTCTTTTTCCTGAATATC 16467 || | ||| ||||||||| ||||| ||||| | | ||| |||| | | || | Sbjct 265914 TCTTGACGCAAGGCATCGTTTCGATGGCATTAAAGAGAAATTCCCTTTCTTTGGCATCTT 265973 Query 16468 GATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTAT 16527 | || || || ||||| || | ||| |||||||| || |||||||| || ||||| || Sbjct 265974 --TGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAAT 266031 Query 16528 CTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGC 16587 || || ||||||| || | || || | || || ||| | |||||| ||| | Sbjct 266032 TTGGAAGACATAGAAACAGCAGGCTTCTGTAATCTGAACTATTTGGCTAAATCGCTCCAC 266091 Query 16588 CAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA--ATATGTGCTTAATG 16645 || || ||||| || || || |||||||| ||||| || ||| | | | | | || Sbjct 266092 CAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAAGACGGGAT--ATA 266149 Query 16646 AAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACT 16705 |||||| | || || | | || | ||| | | | || ||||| | ||||| Sbjct 266150 AAATATCTCTCCTCGGGCTTCAGGGATTCCCAGTGCTGAATGTCCTTGGACAGGTCCACC 266209 Query 16706 TCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTAT 16765 || || | ||||| ||| |||| |||||||||||||||| | ||| ||||||| ||| Sbjct 266210 TCCTCGGTGGTCCAGAAGGAAGCCTCTGCCTTTTTATACATCTGCCAGATATCATGGTAC 266269 Query 16766 TGTATGGGAAATACGAC 16782 | ||||| || ||||| Sbjct 266270 TCGATGGGGAAGACGAC 266286 >seq1685 Length=141252148 Score = 224 bits (248), Expect = 1e-53 Identities = 569/854 (67%), Gaps = 20/854 (2%) Strand=Plus/Minus Query 15935 TCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA-GGGATTAGT 15993 || ||||||||||| |||| | || ||||| | |||||| ||||| ||| | | Sbjct 47457209 TCAAAGAAGTTAGTCTTTCAGT-----GAAATATTCTACATAAAGTCAAATGGGCTCTCT 47457155 Query 15994 AGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTAT 16053 | || || | ||| | ||||||||| | | ||| ||||| ||||| || || Sbjct 47457154 A-CTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAAT 47457096 Query 16054 ATATTGACACATTA-AGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTA 16112 ||||| ||||| ||| |||||| || || || || || || | || | || | Sbjct 47457095 GTATTGCTTCATTAGAGT-GCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGA 47457037 Query 16113 AAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACG 16172 |||| ||||||||| ||| || | |||| || || | ||| || || Sbjct 47457036 GGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTTCTCTCACTCTCTCCTCCGATA 47456977 Query 16173 GTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTC 16232 || | || |||||||| ||||| | || || || || | |||| || || |||| Sbjct 47456976 GTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC--AGTGTAAACCCTCATCTC 47456919 Query 16233 TGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGA 16292 |||| |||| ||| |||||||| || | || ||||| |||||||||||| | ||| | Sbjct 47456918 TGCTAATAAATTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCACA 47456859 Query 16293 ATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATC 16352 |||||| ||||| || | |||||||| || || || || | || || || | | | Sbjct 47456858 ATATCGATGCAAAAGAACTGGAAAAGAAGATGCCTTCTACTGCAGCGAAGGCTACAACAC 47456799 Query 16353 GTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTT 16412 |||| | || || || ||||| | | |||||| | |||| || || || | | Sbjct 47456798 GTTCACCATAGGTGGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCT 47456739 Query 16413 TTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATATCGAT 16470 | | |||| ||||||||| ||||| || | | || ||| | |||| | | ||| | Sbjct 47456738 TGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCC--TTTCTTTGAGATCTTT 47456681 Query 16471 TATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTG 16530 || || || ||||| || | ||| |||||||| || |||||||| || ||||| || || Sbjct 47456680 GATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 47456621 Query 16531 AAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAG 16590 || |||||||| || || || || | || || ||| | |||||| ||| ||| Sbjct 47456620 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTTGGCTAAATCGCTCCACCAA 47456561 Query 16591 GTTCTCATTCACGATACCGTCACTTGCAGCAA--AAAACGCCAATATGTGCTTAATGAAA 16648 || ||||| || || || || ||||| |||| ||||| || ||| | | || ||| Sbjct 47456560 ATTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAACCAGAACATGGGAT--ATAAAA 47456503 Query 16649 TATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCT 16708 ||| | || | | | || || || | | || ||||| | ||||| || Sbjct 47456502 TATCTCTCCCCGGGCTTCAG-GGATTCCCAGTGCCAATGTCCTTGGACAGGTCCACCTCC 47456444 Query 16709 TCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGT 16768 || | ||||| ||| |||| | ||||| |||||||| | ||| ||| ||| ||| | Sbjct 47456443 TCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCCAGATACCATGGTACTCG 47456384 Query 16769 ATGGGAAATACGAC 16782 |||||||| | ||| Sbjct 47456383 ATGGGAAAGATGAC 47456370 Score = 150 bits (166), Expect = 2e-31 Identities = 380/567 (67%), Gaps = 13/567 (2%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || |||| || |||| || || || ||||||| |||||| ||||||| || Sbjct 130531239 AGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTGAAAAGTTCACTGGAAAATGTG 130531180 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| |||| ||||||| | |||||||||| ||||| || || |||||| Sbjct 130531179 AGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAG 130531120 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || | | || || ||||| || | ||||| | | ||| | ||||| || Sbjct 130531119 AAGGTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTC 130531060 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | |||||| | ||||| | || || | || | ||| | |||||||| | ||| Sbjct 130531059 CCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACAGGC-ATCGTTTCAACGGCA 130531001 Query 16439 TTAAACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 || || | | ||| |||| | || |||| | |||| ||| |||| || | ||| | Sbjct 130531000 TTGAAGATAAATTCCCTTTCTT-TGT-TATCTTTAATATGCGT--CAATAAGGAGACTAT 130530945 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 || || || |||||||| ||||| || || || || ||||||||||| | || | Sbjct 130530944 TTATGTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG 130530885 Query 16557 CTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 || || ||||| |||| ||||| ||| ||| |||| | || || |||| || Sbjct 130530884 TAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATG 130530825 Query 16617 CAGCAAAAAACGCC--AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG 16674 | ||||| || ||| |||||| | | || |||||| ||| |||| | || | Sbjct 130530824 CTGCAAAGAAAGCCAGAATATGGGAT--ATAAAATATCTTTACTCAGGCTTCAGGGCTTC 130530767 Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA-AAAGCTAGCCACTG 16733 ||| | | || ||||| | ||||| || | | | |||| |||| | || || Sbjct 130530766 CCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAGA-CCTCTA 130530708 Query 16734 CCTTTTTATACATTTTCCAAATATCAT 16760 | || |||||||||||||||||||||| Sbjct 130530707 CTTTCTTATACATTTTCCAAATATCAT 130530681 >seq1162 Length=100215132 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | |||||||| |||| |||| Sbjct 56822256 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 56822315 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| | || || |||| ||||| | Sbjct 56822316 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 56822375 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 56822376 CCACCACTCTTTCC 56822389 >seq1399 Length=81552678 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| |||||||| || | || ||||| |||||||||||| Sbjct 9735776 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 9735717 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 9735716 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 9735658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511302630382880