Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1685 358 8e-94 seq1724 345 5e-90 seq1399 114 2e-20 seq1115 107 2e-18 seq1162 89.7 6e-13 >seq1685 Length=141252148 Score = 358 bits (396), Expect = 8e-94 Identities = 651/942 (69%), Gaps = 32/942 (3%) Strand=Plus/Minus Query 23788 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTT---CTTGAGACATAACTCCCATTT 23844 |||| |||||| ||||||| | |||| ||| | || ||||| || |||||||| Sbjct 47457290 TTTAGAAGTCAGCATCTAAGGTAAAAGAATTCTGTTGGACTTGACACC--ACTCCCATCC 47457233 Query 23845 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 23904 | || || | || || | | || || || ||||| || | | ||| ||||| | Sbjct 47457232 TCTGATACTTGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 47457178 Query 23905 CCATGAAATCGGATGGATTGGTAACATTATAGATTCTTT-TAAATCCCAATTCAGAAATC 23963 ||| || || |||| | || | | | ||| |||| |||| ||| || Sbjct 47457177 ACATAAAGTCAAATGGGCTCTCTAC-TCCGAAAACCTTGCTAAAACCCAGTTCCAGCATA 47457119 Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023 | ||| ||||| |||||||| || ||| ||||| | |||||||| || || || Sbjct 47457118 AGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGC 47457059 Query 24024 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083 || || || | ||| | || || ||||| ||||| || || || | | || || Sbjct 47457058 TTCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATT 47456999 Query 24084 GATCTTACTGTTTCTTC----ACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 24139 ||| ||| | || || | | ||| ||| | ||||| |||||||| || || Sbjct 47456998 TCTCTCACTCTCTCCTCCGATAGTTTGTG--TACCAGG--TGTTTGAACATCAAGCAAGC 47456943 Query 24140 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199 ||||| |||||| |||||| ||||| ||||| ||||| |||||||||||||| || || Sbjct 47456942 AAAATC--AGTGTAAACCCTCATCTCTGCTAATAAATTCATTGGAAAACGTGAGGCCAGG 47456885 Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 24259 ||| || || || || || ||||| ||||| || ||||| || | |||||||| || || Sbjct 47456884 CATCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACTGGAAAAGAAGATGCC 47456825 Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CGCTGTCATGTATCCA 24316 ||||||||| || ||||| | || | ||| ||||| || | |||| ||||| Sbjct 47456824 TTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTGGCCTCTTTGTCCCCAATCCA 47456765 Query 24317 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 |||||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 47456764 GCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAG 47456705 Query 24377 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 24436 | | | |||| || |||||| | || || ||||| | |||||||||||||| || Sbjct 47456704 AAATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 47456645 Query 24437 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 24496 ||| |||||||| ||||| ||||| || || |||||||| | || || |||||||| || Sbjct 47456644 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAAC 47456585 Query 24497 TTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 24556 | | | |||||| || | ||||||||||| ||||| || || || |||||||| || Sbjct 47456584 TATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCGCTTGCTGCAAAGAA 47456525 Query 24557 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG-- 24614 ||| ||||| |||||||||| | || | || | || ||||| || || Sbjct 47456524 AACCAGAACATGGGATATAAAATATCTCTCCCCGGGCTTCAG-GGATTCC---CAGTGCC 47456469 Query 24615 -ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 24673 || || || || | ||||| || || ||||| || || ||||| ||||| ||||| Sbjct 47456468 AATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATA 47456409 Query 24674 CATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 ||| | |||||| |||| || | || ||||| || ||||| Sbjct 47456408 CATCTGCCAGATACCATGGTACTCGATGGGAAAGATGACAAA 47456367 Score = 206 bits (228), Expect = 3e-48 Identities = 379/550 (69%), Gaps = 8/550 (1%) Strand=Plus/Minus Query 24147 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 24206 ||||||| |||||| || || || | | ||| ||||||| ||||| || ||||| || Sbjct 130531224 CAGTGTAAACCCTCATCACTGCTGAAAAGTTCACTGGAAAATGTGAGGCCAGGCATCAGT 130531165 Query 24207 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 24266 || | || || ||||| ||||| | ||||| || ||||||||||| | | ||| ||| Sbjct 130531164 CCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACT 130531105 Query 24267 GCCGCAAAGGCAATAAGTCTTTCTCCAT---AACCGGCGCTGTCATGTATCC-ACTTTTG 24322 |||||||| || | |||||||| | || | ||| |||| || | Sbjct 130531104 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCAATCCAACACAAG 130531045 Query 24323 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 24382 | ||||| | |||||||| || |||| |||||| || || | ||||| |||| | | | Sbjct 130531044 A-CCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCAACGGCATTGAAGATAAATTC 130530987 Query 24383 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 24442 |||| || |||||||| ||||| ||||| | ||||||| || || ||||| || Sbjct 130530986 CCTTTCTTTGTTATCTTTA--ATATGCGTCAATAAGGAGACTATTTATGTCAGAATGTAT 130530929 Query 24443 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTAT 24502 |||||| || || ||||| || || ||||| || | || |||||||| |||||| Sbjct 130530928 GTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATCTGAACTTCTTG 130530869 Query 24503 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 24562 | |||| |||| | || ||||||| | ||| || |||| |||||||| || |||| Sbjct 130530868 AACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCTGCAAAGAAAGCCAG 130530809 Query 24563 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 24622 | ||| |||||||||| ||| || || | || | ||| | || || || Sbjct 130530808 AATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCCCAGTGCCAAATGTCCTT 130530749 Query 24623 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 24682 || | ||||| || | | |||| || || ||||| | || |||||||| ||||| Sbjct 130530748 GGACAGGTCCACCTCCTGGGCCATCCAGAAAGAGACCTCTACTTTCTTATACATTTTCCA 130530689 Query 24683 GATGTCATGA 24692 || |||||| Sbjct 130530688 AATATCATGA 130530679 >seq1724 Length=455154 Score = 345 bits (382), Expect = 5e-90 Identities = 641/937 (68%), Gaps = 18/937 (2%) Strand=Plus/Plus Query 23788 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 23844 |||| |||||| ||||||| | |||| ||| ||| | || |||| |||||||| Sbjct 265362 TTTAGAAGTCAGCATCTAAGGTAAAAGAATTTTCTGTTGGACTTGACACCACTCCCATCC 265421 Query 23845 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 23904 | || || || || | | | || || || ||||| || | | ||| ||||| | Sbjct 265422 TCTGATACTCTCCTCCTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 265476 Query 23905 CCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCA 23964 |||| || || |||| | || | | | |||| |||| ||| | | Sbjct 265477 CCATAAAGTCAAATGGGCTCTCTACCCCGAAAACCTTACTAAAACCCAGTTCCAGCCTAA 265536 Query 23965 ATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 24024 ||| |||| |||||||| || || ||||| | |||||||| || || || | Sbjct 265537 GTCTGCCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 265596 Query 24025 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 24084 | | || | ||| |||| || ||||| ||||| || || || | | ||||| | Sbjct 265597 TCATAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCTGAACAGCAT---TGATAATTG 265653 Query 24085 AT---CTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 24141 | || ||| | || || ||| | || | | ||| |||||||| || || | Sbjct 265654 TTTCTCTCACTCTCTCCTCCGATGGTTTGTGCACCAGGTATTTGAACATCAAGCA-GCAA 265712 Query 24142 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 24201 |||| ||||||| |||||| ||||| ||||| | ||| || ||||||||||| || |||| Sbjct 265713 AATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTCGAAAACGTGAGGCCAGGCA 265772 Query 24202 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 24261 | || || || || || ||||| ||||| || ||||| || || |||||||| || |||| Sbjct 265773 TCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTT 265832 Query 24262 CTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCACT 24318 ||||||| |||||||| | || | ||| ||||| | | | |||| ||||| Sbjct 265833 CTACTGCAGCAAAGGCTACAACACGTTCACCATAGATAGCCTCTTTGTCCCCAATCCAGC 265892 Query 24319 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 24378 || ||||| || ||||| || || |||||||| || || || |||||||||||| Sbjct 265893 ACAAGGCTCAATCTGCGTTCTTCTTGACGCAAGGCATCGTTTCGATGGCATTAAAGAGAA 265952 Query 24379 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 24438 | | |||| || |||||| | || || ||||| | |||||||||||||| |||| Sbjct 265953 ATTCCCTTTCTTTGGCATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 266012 Query 24439 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 24498 | |||||||| ||||| ||||| || | |||||||| | || || |||||||| ||| Sbjct 266013 GTATGTTTTCCATGGCAATTTGGAAGACATAGAAACAGCAGGCTTCTGTAATCTGAACTA 266072 Query 24499 CTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 24558 | | |||||| || | ||||||||||| ||||| || ||||| |||||||| || Sbjct 266073 TTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 266132 Query 24559 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 24618 ||| | | | |||||||||| | || || || | || | ||| | | || | Sbjct 266133 CCAGAAGACGGGATATAAAATATCTCTCCTCGGGCTTCAGGGATTCCCAGTGCTGAATGT 266192 Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 | || || | ||||| || || ||||| || || |||||||||||||||||||| | Sbjct 266193 CCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCTGCCTTTTTATACATCT 266252 Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 |||||| ||||| || | || || || | ||||| Sbjct 266253 GCCAGATATCATGGTACTCGATGGGGAAGACGACAAA 266289 >seq1399 Length=81552678 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 9735778 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 9735719 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||||| Sbjct 9735718 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 9735659 Query 24277 C 24277 | Sbjct 9735658 C 9735658 Score = 104 bits (114), Expect = 3e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | || || ||||| | ||||||||||||||| ||||| |||||||| ||||| Sbjct 9733358 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 9733299 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 ||||| || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 9733298 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 9733239 >seq1115 Length=110690730 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 66344670 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 66344611 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 66344610 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATTGGGGCAATAAGTAAA 66344551 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 66344550 CTGTTTCTTATACCATA 66344534 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| |||||||||||||| | || |||||||||| | Sbjct 66333967 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 66333908 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 66333907 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 66333848 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 66333847 AGGCTCCAGGTAAAT 66333833 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 66347487 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 66347428 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| |||||| |||||||| ||||| || || || || || ||||| | | | || | Sbjct 66347427 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCCTGAGAACAGTTT 66347368 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 66347367 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 66347317 >seq1162 Length=100215132 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 21931 TTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 21990 ||| ||||||| | |||||||||| | || ||| | || ||||| || |||| ||| Sbjct 7502427 TTGAACTTCTTCTATTTCTGGATAAAAAATCTGTTCGCAAATGAGCTGTGCAATTCGATC 7502368 Query 21991 CCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCC 22050 || | || || | ||| | | ||| ||| ||||| || | || || | |||||| Sbjct 7502367 ACCTTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCC 7502308 Query 22051 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT 22089 ||||||||||| ||||| ||||| |||||| |||||| Sbjct 7502307 TCTATAATCTTCATCTATGACACCAGCTCCTACATCAAT 7502269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593591842144320