Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1399 95.1 2e-14 seq1162 95.1 2e-14 seq1685 93.3 6e-14 seq192 93.3 6e-14 seq1553 91.5 2e-13 seq565 87.8 3e-12 seq1611 86.0 9e-12 >seq1399 Length=81552678 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || || ||||| | |||||| ||||| ||||| || | || Sbjct 71370969 CCACCACACAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGAC 71371028 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| || |||||||| ||| |||||||||||| |||||| Sbjct 71371029 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGA 71371088 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 71371089 ATTCCTTCCTTATCCTG 71371105 >seq1162 Length=100215132 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 10437 GGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATT 10496 || ||||||| |||| | ||| | | || | || ||| ||| | ||||||||| | Sbjct 7502218 GGGTGTTATGGAAGAGTGGCTTCACGGTCAGGCTTGGCTGCAAAACACTTTATTGATGTA 7502277 Query 10497 GGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCAT 10556 |||||||| || || || |||||||||||||||||||| || || || | |||||| | Sbjct 7502278 GGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTTT 7502337 Query 10557 TCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAA 10616 || ||| | ||| | | || | ||| ||| |||| | || | || || ||| | Sbjct 7502338 GGCAAAGAAAAGTTTGAAGTCAAAAAAGGTGATCGAATTGCACAGCTCATTTGCGAACAG 7502397 Query 10617 ATTTTATATCCTAAAAT 10633 ||||| ||||| |||| Sbjct 7502398 ATTTTTTATCCAGAAAT 7502414 >seq1685 Length=141252148 Score = 93.3 bits (102), Expect = 6e-14 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| |||||||||| | || | |||| | |||| | ||| ||| || |||| Sbjct 135788160 TTCCTTCTGGATGTTATGGAGGAGTGGCTCT--GGTCTGGCCTGGCTGCAAAAAACTTTA 135788217 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | |||| |||||||| || || ||||||||||||| ||||||||| || || || | Sbjct 135788218 TAGATACAGGAGCTGGTGTCATAGACGAAGATTATACAGGAAATGTTGGCGTTGTAGTGC 135788277 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 ||||| || ||| ||| ||| | | || | ||| ||| |||||| ||| | | | Sbjct 135788278 TTAATTTTTGTAAAGAAAGGTTTGAAGTCAAAAAAGGTGATCAAATATCACAACTTTTTT 135788337 Query 10609 GTGAAAAAATTTT 10621 ||||| | ||||| Sbjct 135788338 GTGAACAGATTTT 135788350 >seq192 Length=157873769 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||| | || || || Sbjct 100760684 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATACTGTAGTCAGA 100760626 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| |||||||| ||| ||||| Sbjct 100760625 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTTATCAGGAGG 100760566 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 100760565 AATTCCTTCCTTATCCTG 100760548 Score = 87.8 bits (96), Expect = 3e-12 Identities = 207/300 (69%), Gaps = 22/300 (7%) Strand=Plus/Minus Query 112497 ATATAATATATTTTAAATCGAATACTTTAAATGATATTTTATATAAATTATGTTCTGAAG 112556 ||||||||||| ||| || ||| | || || |||| | |||| ||||| || | | Sbjct 108509611 ATATAATATATATTATATATTATATTATATATAATATATATTATATATTATATT-TATAT 108509553 Query 112557 ATATTATA-ATTCCCGATGATAGttatataaataatttaaattata-atgatatgtttat 112614 ||| |||| ||| || ||| ||||||| ||||| || |||||| || |||| | ||| Sbjct 108509552 ATAATATATATTATATATTATATTTATATATATAATATATATTATATATTATATTTATAT 108509493 Query 112615 atctgaaataatgggatttaataaaattatgagacaatttatagaattatttaaaagaaa 112674 || | | ||| | || || || | |||| || |||| ||||| || | Sbjct 108509492 ATATAATATATT---ATATATTATATTTAT------ATATATAATATTATATA----TTA 108509446 Query 112675 tatttattatataagaaagaatatattattatttgttattataaattttattttatctat 112734 |||| ||||||| | | | |||| |||||| | ||| |||| ||| ||| |||| ||| Sbjct 108509445 TATTATATATATAATATATATTATA-TATTATATTTTA-TATATATTATATATTATATAT 108509388 Query 112735 attaattgtttatgtgggtat-tgtatatattaaaaagtatgaaaatttatatttatata 112793 ||| || ||||| | ||| | || ||| ||| | ||| | | ||||||||||||| Sbjct 108509387 ATT-ATATTTTATAT-AATATATATAAATA-TAATATATATTATATATTATATTTATATA 108509331 >seq1553 Length=133034539 Score = 91.5 bits (100), Expect = 2e-13 Identities = 219/312 (70%), Gaps = 26/312 (8%) Strand=Plus/Plus Query 112497 ATATAATATATTTTAAATCGAATACTTTAAATGATATTTTATATAAATTATGTTCT---G 112553 |||| |||||||||| || |||| ||| || |||||||||| ||||| || | Sbjct 94697374 ATATTATATATTTTATAT--AATATATTATAT---ATTTTATATATATTATATTATATAT 94697428 Query 112554 AAGATATTATAATTCCCGATGATAGttatataaataatttaaat---tataatgatatgt 112610 | ||||||| ||| || ||| |||||||||| || || || ||| || ||| | Sbjct 94697429 TATATATTAT-ATTATATATTATA-TTATATAAATTATATATATATATATTATATTATAT 94697486 Query 112611 ttatatctgaaata-atgggattta-ataaaattatgagacaatttatagaattatttaa 112668 ||||| | | ||| || || || |||||| ||| | | | |||| ||||| ||| Sbjct 94697487 ATATATATTATATATATATTATATATATAAAA-TAT-ATATATATTAT---ATTATATAA 94697541 Query 112669 aagaaatattta-ttatataagaaagaatatattat-tatttgttattataaattttatt 112726 | | ||| || |||||||| | | ||||||| | ||| ||||||| ||||||| Sbjct 94697542 ATATATTATATATTTATATAATATATTATATATTTTATATAATATATTATATATTTTATA 94697601 Query 112727 ttatctatatta-attgtttatgtg-ggtattgtatatattaaaaagtatgaaaatttat 112784 | || ||||||| || ||||| || |||| ||||| ||| | | ||| | | | ||| Sbjct 94697602 TAATATATATTATATATTTTATATGATATATTATATATTTTATATAATAT-ATATTATAT 94697660 Query 112785 a-tttatataat 112795 | |||||||||| Sbjct 94697661 ATTTTATATAAT 94697672 >seq565 Length=117381234 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | | |||| || ||| || ||||| || | || Sbjct 72458849 CCACCACGAAGTCTCAACACAAGATGAAGAATAGACTCCTTTTGA-ATATTGTAGTTAGA 72458791 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | || || |||||||| |||| |||||||||||| ||||| Sbjct 72458790 CAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 72458731 Query 146170 AATTCCTTCTTTATC 146184 ||||||||| ||||| Sbjct 72458730 AATTCCTTCCTTATC 72458716 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | | |||| || ||| || ||||| | || || Sbjct 50944598 CCACCACGAAGTCTCAACACAAGATGAAGAATAGACTCCTTTTGA-ATATTGTGGTCAGA 50944540 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | || || ||||||| |||| |||||||||||| ||||| Sbjct 50944539 CAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAGGATCAGTCTTTGCTGATCAGGAGG 50944480 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 50944479 AATTCCTTCCTTATCCTG 50944462 >seq1611 Length=34552619 Score = 86.0 bits (94), Expect = 9e-12 Identities = 142/197 (72%), Gaps = 14/197 (7%) Strand=Plus/Plus Query 211922 atatataaatgtattaaattttaaatataactatantaattatgatgaaatatacaaatt 211981 |||||||||| ||||| || | | |||||| |||| || || || | ||||| ||| Sbjct 13444899 ATATATAAATATATTATATATAATATATAAATATATTATATACAAT-ATATATATAAA-- 13444955 Query 211982 aagaaatattat-ttaCACATTTTCTGAACTACaaaaatataata---atgttaaaaaat 212037 || | ||| ||| ||| | ||| | | | || ||| ||||| || || || | ||| Sbjct 13444956 AATATATAATATATTATATATTATATACAATATAAATATATATTACATATTATATACAAT 13445015 Query 212038 ctaattttatagaatatatattatat-CAAGTTAAACATTTAATCGAATATAATGAAATG 212096 ||| | |||| |||||||||||||| ||| |||| || |||| ||||| | || Sbjct 13445016 ATAAATATATA-AATATATATTATATACAACATAAATATATAAT---ATATAT--ATATT 13445069 Query 212097 ATAGACAATATAAATAT 212113 ||| ||||||||||||| Sbjct 13445070 ATATACAATATAAATAT 13445086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743363902305280