Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1685 228 8e-55 seq1724 215 5e-51 seq1162 116 3e-21 seq1399 102 8e-17 >seq1685 Length=141252148 Score = 228 bits (252), Expect = 8e-55 Identities = 523/781 (67%), Gaps = 21/781 (3%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| ||||| | ||| ||| || || | |||||| ||| ||| Sbjct 47457290 TTTAGAAGTCAGCATCTAAGGTAAAAGAATT--CTGTTGGACTTGACACCACTCCCATCC 47457233 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| | | |||||| | |||||||| || || |||| | ||||||||| | Sbjct 47457232 TCTGATACTTGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 47457178 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATA 16064 |||||| ||||| || | | | | | || | |||| ||||| || | Sbjct 47457177 ACATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 47457118 Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124 ||| || |||||||| || || || || ||||||| | || ||||| || || | | Sbjct 47457117 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 47457058 Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATAT 16184 | ||||| | || || || | || | | |||||| | ||| || | || ||||| | Sbjct 47457057 TCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTT 47456998 Query 16185 CTCTTACTACACTATTTAACGGAGGGTTT----AATAAGTGTTTAAACATTATACAAGCA 16240 |||| ||| | || | | || |||| | | |||||| ||||| | |||||| Sbjct 47456997 CTCTCACT-CTCTCCT---CCGATAGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 47456942 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 |||||| || || || || || || || || || || || ||||| || || || ||| Sbjct 47456941 AAATCAG--TGTAAACCCTCATCTCTGCTAATAAATTCATTGGAAAACGTGAGGCCAGGC 47456884 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || ||||||||||| || | ||| ||||| | ||||| |||| |||||||| || ||| Sbjct 47456883 ATCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACTGGAAAAGAAGATGCCT 47456824 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctatcc 16418 || ||||| || || || || | || ||||| || || || ||| | | | |||| Sbjct 47456823 TCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTGGCCTCTTTGTCC--CCAATCC 47456766 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 | ||||||| ||| || | || ||||| ||| | || || ||||| || | Sbjct 47456765 AGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGA 47456706 Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | | |||||||| |||| || ||||| || || || | |||||||||||| | Sbjct 47456705 GAAATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAG 47456646 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 |||| || || ||||| || || || || ||||| || || | ||||| | || || | Sbjct 47456645 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAA 47456586 Query 16599 CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAA 16658 || | ||| | || | || ||||| || ||||| |||||||| |||||||| | Sbjct 47456585 CTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCGCTTGCTGCAAAGA 47456526 Query 16659 A 16659 | Sbjct 47456525 A 47456525 Score = 109 bits (120), Expect = 5e-19 Identities = 298/454 (66%), Gaps = 3/454 (1%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 |||||||| | ||| || || || || || || || | | || | |||||||| || Sbjct 130531236 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTGAAAAGTTCACTGGAAAATGTGAGG 130531177 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| |||||| |||| || | ||| ||||| ||||| |||||||||||||| Sbjct 130531176 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 130531117 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 | | ||| ||| |||||| || | | || || || | || | ||| | | Sbjct 130531116 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 130531057 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 ||||| ||||| ||| || | || |||||| ||| | || | ||||| Sbjct 130531056 ATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACAG-GCATCGTTTCAACGGCATTG 130530998 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 || | | | | |||||||| ||||| ||||| | || || || | ||||| || Sbjct 130530997 AAGATAAATTCCCTTTCTTTGTTATCTTTAATAT--GCGTCAATAAGGAGACTATTTATG 130530940 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 || ||||| || || || || || || || || ||||| ||||| | ||| | || Sbjct 130530939 TCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATC 130530880 Query 16595 TGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA 16654 || ||||| ||| ||| | |||||||| | | ||| ||||| | |||||| Sbjct 130530879 TGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCTGCA 130530820 Query 16655 AAAAACGCAAGTATGTGTTTAATAAAAttttttt 16688 || || || || || || ||||||| | ||| Sbjct 130530819 AAGAAAGCCAGAATATGGGATATAAAATATCTTT 130530786 >seq1724 Length=455154 Score = 215 bits (238), Expect = 5e-51 Identities = 616/939 (66%), Gaps = 20/939 (2%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| ||||| | ||| ||| ||| || | |||||| ||| ||| Sbjct 265362 TTTAGAAGTCAGCATCTAAGGTAAAAGAATTTTCTGTTGGACTTGACACCACTCCCATCC 265421 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| || | ||||| | |||||||| || || |||| | ||||||||| | Sbjct 265422 TCTGATACTCTCCTCCTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 265476 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATA 16064 ||||||| ||||| || | | | | | ||| | |||| ||||| | | Sbjct 265477 CCATAAAGTCAAATGGGCTCTCTACCCCGAAAACCTTACTAAAACCCAGTTCCAGCCTAA 265536 Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124 ||| | |||||||| || || | || ||||||| | || ||||| || || | | Sbjct 265537 GTCTGCCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 265596 Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATAT 16184 | | ||| | || || || | || | | |||||| | ||| || | || ||| | | Sbjct 265597 TCATAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTGTTT 265656 Query 16185 CTCTTACTACACTATTTAACGGAGGGTTT----AATAAGTGTTTAAACATTATACAAGCA 16240 |||| ||| | || | | || ||||| | | || ||| ||||| | || ||| Sbjct 265657 CTCTCACT-CTCTCCT---CCGATGGTTTGTGCACCAGGTATTTGAACATCAAGCA-GCA 265711 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 |||||||| || || || || || || || || | || || ||||| || || || ||| Sbjct 265712 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTCGAAAACGTGAGGCCAGGC 265771 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || ||||||||||| || | ||| ||||| | ||||| ||||| |||||||| || ||| Sbjct 265772 ATCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCT 265831 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctatcc 16418 || ||||| ||||| || || | || ||||| || | || ||| | | | |||| Sbjct 265832 TCTACTGCAGCAAAGGCTACAACACGTTCACCATAGATAGCCTCTTTGTCC--CCAATCC 265889 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 | || |||| ||| || | || || || ||| | || || |||||||| | Sbjct 265890 AGCACAAGGCTCAATCTGCGTTCTTCTTGACGCAAGGCATCGTTTCGATGGCATTAAAGA 265949 Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | | |||||||| |||| || ||||| || || || | |||||||||||| | Sbjct 265950 GAAATTCCCTTTCTTTGGCATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAG 266009 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 |||| || || ||||| || || || || |||| || || | ||||| | || || | Sbjct 266010 AATGTATGTTTTCCATGGCAATTTGGAAGACATAGAAACAGCAGGCTTCTGTAATCTGAA 266069 Query 16599 CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAA 16658 || | ||| | || | || ||||| || ||||| ||||| || |||||||| | Sbjct 266070 CTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGA 266129 Query 16659 ACGCAAGTATGTGTTTAATAAAAtttttttCGT-TATCTGAAAGTTTTAACCAGTCAGAA 16717 | | || | | ||||||| | | || | || | | || ||||| | Sbjct 266130 AAACCAGAAGACGGGATATAAAATATCTCTCCTCGGGCTTCAGGGATT-CCCAGTGCTGA 266188 Query 16718 AAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATAC 16777 | || || || | || ||||| || ||||| || ||||| | |||||||||||| Sbjct 266189 ATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCTGCCTTTTTATAC 266248 Query 16778 ATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 || | ||| || || | ||| | || || || || ||| Sbjct 266249 ATCTGCCAGATATCATGGTACTCGATGGGGAAGACGACA 266287 >seq1162 Length=100215132 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || || |||||| || | | || |||||||| | Sbjct 56811296 TTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTTGTTTCTGCCATAACTGCAAAAC 56811355 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || |||||||||||||||||||||||||| ||||| |||| Sbjct 56811356 GCTGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 56811415 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||||||||||| || Sbjct 56811416 CCATAAAATCAAAAGGATTTTCTG 56811439 >seq1399 Length=81552678 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 9735776 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 9735717 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||| ||||| || Sbjct 9735716 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 9735657 Query 16379 ACCAATCGCTCACC 16392 || | || ||||| Sbjct 9735656 ACAACACGTTCACC 9735643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462410918002400