Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1685 257 2e-63 seq1724 253 2e-62 seq1399 114 1e-20 >seq1685 Length=141252148 Score = 257 bits (284), Expect = 2e-63 Identities = 497/727 (68%), Gaps = 11/727 (2%) Strand=Plus/Minus Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963 || ||||| | ||||| | | ||||| | |||||||||||||| ||| |||| Sbjct 47457242 ACTCCCATCCTCTGATACTTGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGT 47457188 Query 13964 GATATATTTTCCATAAAATCAAATGGATT-TGTTGACATAAACACTTTATCACAACCTAG 14022 || ||||| | |||||| |||||||| | | | | ||| ||| | | |||| || Sbjct 47457187 GAAATATTCTACATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA-AACCCAG 47457129 Query 14023 TTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCAT 14082 ||| | | | ||| || || | |||||||| ||||| ||||| | |||||||| Sbjct 47457128 TTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCAT 47457069 Query 14083 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 14142 || || || || ||||| | | ||| | ||||| | |||||| ||||| | Sbjct 47457068 CCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATT 47457009 Query 14143 GTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 14202 | | || || | | | || | || | | | || ||||| || || || Sbjct 47457008 GATAATTATTTCTCTCACTCTCTCCTCCGATAGTTTGTGTACCAGGTGTTTGAACATCAA 47456949 Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 || ||||||||| | || ||||||||||| ||||||| ||| || ||||| || | Sbjct 47456948 GCAAGCAAAATCAGTGTAAA--CCCTCATCTCTGCTAATAAATTCATTGGAAAACGTGAG 47456891 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 || ||||||| ||||||||| || | ||| ||||| | || || || | ||||||||| Sbjct 47456890 GCCAGGCATCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACTGGAAAAGAA 47456831 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14382 || || || |||||||| || |||| | ||||| ||| | | || | ||||| | Sbjct 47456830 GATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTGGCCTCTTTGTCCCC 47456771 Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||| ||||| || | || || || | | || ||| |||||||| ||||| Sbjct 47456770 AATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATT 47456711 Query 14443 AAATAAATGTTCCTTCTCTTT-AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14501 || | | |||| | ||||| || ||| | |||| || |||||||| | ||||||| Sbjct 47456710 GAAGAGAAATTCCCTTTCTTTGAGATCTTTGA-TGTAAGTGTCAATAAGGAGACTATACA 47456652 Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14561 ||||||| |||||||||||||| || || || || ||||| ||||| | ||||||| Sbjct 47456651 TTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAA 47456592 Query 14562 ATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 || || | | ||||| || ||||||||||||| ||||| ||||| || |||| Sbjct 47456591 TCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCGCTTGCTG 47456532 Query 14622 CAAAAAA 14628 |||| || Sbjct 47456531 CAAAGAA 47456525 Score = 132 bits (146), Expect = 5e-26 Identities = 297/439 (68%), Gaps = 9/439 (2%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| | ||| || | |||||||| || || | |||||| | |||||||| | Sbjct 130531236 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTGAAAAGTTCACTGGAAAATGTGAGG 130531177 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || ||||||| |||| |||| || | ||| ||||| || || || || |||||||| Sbjct 130531176 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 130531117 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14383 | | || ||| ||||| ||| | ||||||||| | | | ||||||| Sbjct 130531116 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 130531057 Query 14384 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||| | || |||| | | || || || | | | | || ||||||| ||||| Sbjct 130531056 ATCCAACA-CAAGACCCAACCTGCCTTCTTCTTGACACAGGC-ATCGTTTCAACGGCATT 130530999 Query 14443 AAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACA 14501 || | | |||| | ||||| || ||| || |||| |||||||| | |||| | Sbjct 130530998 GAAGATAAATTCCCTTTCTTTGTTATCTTTAA---TATGCGTCAATAAGGAGACTATTTA 130530942 Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14561 | ||||| ||||||||||| ||||| || || || ||||| || || | ||||| Sbjct 130530941 TGTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAA 130530882 Query 14562 ATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 || || ||| |||| ||| |||| ||||||| | ||| ||||||| |||| Sbjct 130530881 TCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCTG 130530822 Query 14622 CAAAAAATGCC--AATATG 14638 |||| || ||| |||||| Sbjct 130530821 CAAAGAAAGCCAGAATATG 130530803 >seq1724 Length=455154 Score = 253 bits (280), Expect = 2e-62 Identities = 525/775 (68%), Gaps = 10/775 (1%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| ||||||| | |||| ||| || | || | | || | || ||||| | Sbjct 265364 TAGAAGTCAGCATCTAAGGTAAAAGAATTTTC-TGTTGGACTTGACACCACTCCCATCCT 265422 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | |||| | |||||||||||||| ||| |||||| ||||| || Sbjct 265423 CTGATACTCTCCTCCTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCTC 265477 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 |||||| |||||||| | | | || || ||| | |||| ||||| | | Sbjct 265478 CATAAAGTCAAATGGGCTCTCTACCCCGAAAACCTTACTAAAACCCAGTTCCAGCCTAAG 265537 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 ||| | || | |||||||| |||| ||||| | |||||||| || || || || Sbjct 265538 TCTGCCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 265597 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 | ||| | | || | ||||| | |||||| ||||| | | | || | Sbjct 265598 CATAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTGTTTC 265657 Query 14155 CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 14214 | | | || | || || | || | ||| || || || || |||||||| Sbjct 265658 TCTCACTCTCTCCTCCGATGGTTTGTGCACCAGGTATTTGAACATCAAGCA-GCAAAATC 265716 Query 14215 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 14274 ||| || | ||||||||||| ||||||||||| || ||||| || | || ||||||| Sbjct 265717 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTCGAAAACGTGAGGCCAGGCATCAG 265776 Query 14275 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 14334 ||||||||| || | ||| ||||| | || || || ||||||||||| || || || || Sbjct 265777 TCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCTAC 265836 Query 14335 TGCAGCAAACGCTATTAATCGTTCTCCAAACGAT-GCTTTTTTGTTCGATATCCATTTTC 14393 ||||||||| |||| | ||||| ||| | ||| || | ||||| | ||||| Sbjct 265837 TGCAGCAAAGGCTACAACACGTTCACCATA-GATAGCCTCTTTGTCCCCAATCCAGCACA 265895 Query 14394 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTT 14453 || || || | || || || | || ||| ||||| || |||||||| | | || Sbjct 265896 AGGCTCAATCTGCGTTCTTCTTGACGCAAGGCATCGTTTCGATGGCATTAAAGAGAAATT 265955 Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513 || | ||||| | | | ||||| || |||||||| | |||||||||||||| |||| Sbjct 265956 CCCTTTCTTTGGCATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 266015 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTG 14573 |||||||||| || || || || |||| ||||| | ||||||| || || | Sbjct 266016 TGTTTTCCATGGCAATTTGGAAGACATAGAAACAGCAGGCTTCTGTAATCTGAACTATTT 266075 Query 14574 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14628 | ||||| || ||||||||||||| ||||| |||||||| |||||||| || Sbjct 266076 GGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 266130 >seq1399 Length=81552678 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 9735778 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 9735719 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| || || || ||||||||||| | Sbjct 9735718 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 9735659 Query 14346 CTATTAATCGTTCTCC 14361 ||| | ||||| || Sbjct 9735658 CTACAACACGTTCACC 9735643 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 9738054 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 9737996 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 9737995 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 9737936 Query 13975 CATAAAATCAAATGGATT 13992 |||||| |||||||| || Sbjct 9737935 CATAAAGTCAAATGGGTT 9737918 Score = 86.0 bits (94), Expect = 6e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| || |||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 9733351 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 9733292 Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | ||||||| Sbjct 9733291 AAGCCATAGAAACAGCGGGCTTCTG 9733267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482240183369120