Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1724 96.9 7e-15 seq1399 93.3 8e-14 >seq1724 Length=455154 Score = 96.9 bits (106), Expect = 7e-15 Identities = 294/444 (66%), Gaps = 19/444 (4%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||||||||| ||||| ||||||||| ||| | || ||||| || || | Sbjct 265853 TTGTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCCGGTTCTTTTGCATCGATATTGT 265794 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| | || | ||||||| ||||| | || ||||| | ||| || | Sbjct 265793 GGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCGAATGAACTTATTAGCAGAG 265734 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCC 102095 | || ||| | || | || ||||| ||| || |||| ||| | | || | | | Sbjct 265733 ATGAGGGTTTACACTGTGATTTTGC-TGCTTGATGTTCAAATA---CCTGGTGCACAAAC 265678 Query 102096 CATC--AAGAGAAAG-GATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152 |||| | |||| || || |||| ||| | || || | || ||||| |||| Sbjct 265677 CATCGGAGGAGAGAGTGAGAGAAACAATTATCA---ATGCTGTTCAGATAGAACAGGAAT 265621 Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212 | ||||| | || ||||| | || | | || ||||| |||| | |||| || | Sbjct 265620 TCCTCACTGAGGCCTTGCCTATGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAAT 265561 Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG-ACTAGAAAAGCACTATAAT 102271 |||||| |||||||||| | ||| | | ||| |||| ||| || | | | Sbjct 265560 GCATTGAGTTTGTGGCAGGCAGACTTAGGCTGGAACTGGGTTTTAGTAAGG--TTTTCGG 265503 Query 102272 GTTA-CCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTT 102330 | || | ||| || || ||||| |||||||| || || ||||| ||||| || Sbjct 265502 GGTAGAGAGCCCATTTGACTTTATGGAGAATATTTCACT-GA----AAGACTAACTTCTT 265448 Query 102331 TGAAAAGAGAGTCGCCGAGTATCA 102354 ||| | ||||| | |||||||| Sbjct 265447 TGAGAGGAGAGGAGGAGAGTATCA 265424 >seq1399 Length=81552678 Score = 93.3 bits (102), Expect = 8e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||||||||| ||||| ||||||||| |||| | || ||||| || |||| Sbjct 9735653 TTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCT 9735712 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || ||||||| | || | ||||||| ||||| | |||||||| Sbjct 9735713 GGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGA 9735758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989362319577220