Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1724 253 2e-62 seq1685 235 5e-57 seq1399 116 3e-21 seq1162 111 1e-19 seq1115 96.9 3e-15 >seq1724 Length=455154 Score = 253 bits (280), Expect = 2e-62 Identities = 593/886 (67%), Gaps = 29/886 (3%) Strand=Plus/Plus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAG 11388 ||| |||||| | ||||| || | ||| | || || || |||||||| | || Sbjct 265411 CACTCCCATCCTCTGATACTCTCCTCCTCTCCTCTCAAAGAAGTTAGTCTTTC-----AG 265465 Query 11389 TGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAA 11448 ||| |||| |||||||||| ||| || | | ||| ||| || || | |||| | Sbjct 265466 TGAAATATTCTCCATAAAGTCAAATGGGCTCTCTACCCCGAAAACCTTACTAAAACCCAG 265525 Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 || | ||| |||| || || || || | || ||||| | |||||||| Sbjct 265526 TTCCAGCCTAAGTCTGCCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCAT 265585 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568 || || || | || || | || | || | || |||| |||||| | ||| |||| Sbjct 265586 CCCAATGAGCTTCATAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCTGAACAGCAT- 265644 Query 11569 AATGATTATCGACGTTATAACT---TCCTTAGATGGTGGATGTAATAAATGTTTAAACAT 11625 |||| || | | | ||| |||| |||||| || | | | ||| ||||| Sbjct 265645 --TGATAATTGTTTCTCTCACTCTCTCCTCCGATGGTTTGTGCACCAGGTATTTGAACAT 265702 Query 11626 TAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGT 11685 || || ||||||||||| |||||||| || ||||| || || |||||||| ||||| || Sbjct 265703 CAAGCA-GCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTCGAAAACGT 265761 Query 11686 TAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAA 11745 | || ||||||| ||||||||| || | ||| ||||| | ||||| ||||| ||||| Sbjct 265762 GAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACCGGAAAA 265821 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATA---CCTTGTTGCT 11802 ||| || || || || || ||||| ||||| || | ||| ||||| | ||| ||| Sbjct 265822 GAAGATGCCTTCTACTGCAGCAAAGGCTACAACACGTTCACCATAGATAGCCTCTTTGTC 265881 Query 11803 AGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGC 11862 ||||| ||| ||||| || ||||| || ||||| ||| ||||| || || Sbjct 265882 CCCAATCCAGCACAAGGCTCAATCTGCGTTCTTCTTGACGCAAGGCATCGTTTCGATGGC 265941 Query 11863 GTTAA--ATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTA 11920 |||| | |||| | ||||| | |||| | | || || || || | | |||| Sbjct 265942 ATTAAAGAGAAATTC--CCTTTCTTTGGCATCTTTGATGTAAGTGTCAATAAGGAGACTA 265999 Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCT 11980 |||||||| ||||| || |||||||| || ||||| || |||||||||| | || ||| Sbjct 266000 TACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGACATAGAAACAGCAGGCTTCT 266059 Query 11981 GAACACTGTAC-ATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 | | ||| || || | ||||| ||| | ||||| |||||||| || |||||||| Sbjct 266060 GTAATCTGAACTATTTGGCT-AAATCGCTCCACCAAATTTTCATTTACTATGCCATCACT 266118 Query 12040 AGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC----GTCTTTAGTTAATT 12095 | |||||| || | || | | | |||||| ||| | || | ||| || | Sbjct 266119 TGCTGCAAAGAAAACCAGAAGACGGGATATAAAATATCTCTCCTCGGGCTTCAGGGA--- 266175 Query 12096 TATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCA 12155 ||||| | | | || || || | || || || || |||||| || ||| Sbjct 266176 -TTCCCAGTGCTGAATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCT 266234 Query 12156 CTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAA 12201 ||| | ||||||||| | |||||||||||| |||| || ||||| Sbjct 266235 CTGCCTTTTTATACATCTGCCAGATATCATGGTACTCGATGGGGAA 266280 >seq1685 Length=141252148 Score = 235 bits (260), Expect = 5e-57 Identities = 511/757 (68%), Gaps = 22/757 (3%) Strand=Plus/Minus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAG 11388 ||| |||||| | ||||| | | |||| | || || || |||||||| | || Sbjct 47457243 CACTCCCATCCTCTGATACTTGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AG 47457189 Query 11389 TGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAA 11448 ||| |||| || ||||||| ||| || | | ||| ||| || || | |||| | Sbjct 47457188 TGAAATATTCTACATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAG 47457129 Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 || | | ||| ||||| || || || || || || ||||| | |||||||| Sbjct 47457128 TTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCAT 47457069 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568 || || || | ||| || | || | || | || |||| |||||| | ||| |||| Sbjct 47457068 CCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATT 47457009 Query 11569 AATGATTATCGACGTTATAACT---TCCTTAGATGGTGGATGTAATAAATGTTTAAACAT 11625 || ||||| | | ||| |||| ||| || |||| | ||||| ||||| Sbjct 47457008 GATAATTATTTC---TCTCACTCTCTCCTCCGATAGTTTGTGTACCAGGTGTTTGAACAT 47456952 Query 11626 TAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGT 11685 || || ||||||||| |||||||| || ||||| || || | |||||| ||||| || Sbjct 47456951 CAAGCAAGCAAAATCAG--TGTAAACCCTCATCTCTGCTAATAAATTCATTGGAAAACGT 47456894 Query 11686 TAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAA 11745 | || ||||||| ||||||||| || | ||| ||||| | ||||| |||| ||||| Sbjct 47456893 GAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACTGGAAAA 47456834 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATA---CCTTGTTGCT 11802 ||| || || || || || || || ||||| || | ||| ||||| ||| ||| Sbjct 47456833 GAAGATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTGGCCTCTTTGTC 47456774 Query 11803 AGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGC 11862 ||||| ||||||||| || ||||| || || || ||| ||||| || || Sbjct 47456773 CCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGC 47456714 Query 11863 GTTAAATAAATGCATTT--TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTA 11920 || || | | ||| ||||| | |||| | | || || || || | | |||| Sbjct 47456713 ATTGAAGAGAA--ATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTA 47456656 Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCT 11980 |||||||| ||||| || |||||||| || ||||| || ||||||||||| || || ||| Sbjct 47456655 TACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCT 47456596 Query 11981 GAACACTGTAC-ATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 | | ||| || || | ||||| ||| | ||||| |||||||| || ||||| || Sbjct 47456595 GTAATCTGAACTATTTGGCT-AAATCGCTCCACCAAATTTTCATTTACTATGCCATCGCT 47456537 Query 12040 AGATGCAAAAAATGCTAGTATATGTTTTATAAAGTAT 12076 | |||||| || | || | ||| |||||| ||| Sbjct 47456536 TGCTGCAAAGAAAACCAGAACATGGGATATAAAATAT 47456500 Score = 158 bits (174), Expect = 1e-33 Identities = 315/459 (69%), Gaps = 16/459 (3%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| | ||| |||||||| || || || || | |||||| | |||||||| | Sbjct 130531236 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTGAAAAGTTCACTGGAAAATGTGAGG 130531177 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||||| |||| |||| || | ||| ||||| ||||| |||||||||||||| Sbjct 130531176 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 130531117 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT--ATA----CCTTGTTGCTA 11803 | | ||||| ||||| ||| | || | |||||||| || | ||||| | | Sbjct 130531116 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 130531057 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 ||||| | ||||| | || ||||| || || || ||| ||||| | || Sbjct 130531056 ---ATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAACGGCA 130531001 Query 11864 TT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 || | |||||| | ||||| | |||||| ||| ||||| || || | | ||||| Sbjct 130531000 TTGAAGATAAATTC--CCTTTCTTTGTTATCT-TTA-ATATGCGTCAATAAGGAGACTAT 130530945 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 || || ||||| || ||||| ||||| ||||| || |||||||| || | |||| Sbjct 130530944 TTATGTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG 130530885 Query 11982 AACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041 | ||| || || | |||| |||| | || || |||| || || ||||||| | Sbjct 130530884 TAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATG 130530825 Query 12042 ATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTT 12080 |||||| || || || ||||| |||||| ||| ||| Sbjct 130530824 CTGCAAAGAAAGCCAGAATATGGGATATAAAATATCTTT 130530786 >seq1399 Length=81552678 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| |||||||| | || ||||||| ||||||||| || Sbjct 9735776 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 9735717 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| || || ||||| || ||||| ||| Sbjct 9735716 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 9735657 Query 11774 ACTACTCTTTCTCC 11787 || || | ||| || Sbjct 9735656 ACAACACGTTCACC 9735643 >seq1162 Length=100215132 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 56822256 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 56822315 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| | ||| || ||||| ||||| | Sbjct 56822316 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 56822375 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 56822376 CCACCACTCTTTCCCC 56822391 >seq1115 Length=110690730 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || ||||||||| Sbjct 66344670 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 66344611 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || ||||||||||| || || || | Sbjct 66344610 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATTGGGGCAATAAGTAAA 66344551 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 66344550 CTGTTTCTTATACCAT 66344535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468422403904960