Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq683 116 4e-21 seq1399 100 3e-16 seq1044 100 3e-16 seq334 93.3 4e-14 >seq683 Length=106955855 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| | ||| | ||||||||||| || ||||| || || | Sbjct 98906531 CCACCTCTGAGACGGAGAACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAC 98906590 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| |||||||| |||||| ||||||| | ||||| || ||||| Sbjct 98906591 AGGGTGCGACCATCTTCCAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 98906650 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| ||| || | | || | ||||| ||||||||||| Sbjct 98906651 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 98906710 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || |||| || || ||||| || ||||| Sbjct 98906711 TCGAGGGTAATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 98906757 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-T 139605 || |||| || ||||| | || |||||||| || ||||| || || || |||| | Sbjct 98905628 AAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGT 98905687 Query 139606 CGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTC 139665 | | ||||| |||||||| |||||| ||||||| | ||||| || ||||| |||||||| Sbjct 98905688 CCA-TCTTCCAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTC 98905746 Query 139666 TTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| ||| || | | || | ||||| ||||||||||||| | ||| Sbjct 98905747 CTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGT 98905806 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || ||||| || | || || ||||| || ||||| Sbjct 98905807 GATGGTTTTGCCAGTGAGTGTCTTCACGAAGATCTGCAT 98905845 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| | ||| | || |||||||| || ||||| || || | Sbjct 98906987 CCACCTCTGAGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 98907046 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| |||||||| |||||| ||||||| | ||||| || ||||| Sbjct 98907047 AGGGTGCGACCATCTTCTAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 98907106 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| ||| || | | || | ||||| ||||||||||| Sbjct 98907107 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 98907166 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || |||| || || || || || ||||| Sbjct 98907167 TCGAGGGTGATTGTCTTACCAGTCAGAGTCTTCACAAAGATCTGCAT 98907213 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| | ||| | ||||||||||| || ||||| || || | Sbjct 98906759 CCACCTCTGAGACGGAGAACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAC 98906818 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| |||||||| ||||| | ||||| | ||||| || ||||| Sbjct 98906819 AGGGTACGACCATCTTCCAGCTGTTTTCCAGCGAAAATCAGCCTCTGCTGGTCAGGAGGG 98906878 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| || || ||| ||| ||| | | || | ||||| ||||||| ||| Sbjct 98906879 ATGCCTTCCTTATCTTGGATCTTTGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACC 98906938 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | |||||||| || | || || ||||| || ||||| Sbjct 98906939 TCAAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATCTGCAT 98906985 >seq1399 Length=81552678 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || ||||| || || ||||| || || Sbjct 65744278 CCACCTCTCAGACGCAGGACCAGGTGTAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 65744219 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || ||| |||| || | ||||| |||||||| Sbjct 65744218 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 65744159 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||||||||| || ||| || || | | ||| | ||||| |||||||||| Sbjct 65744158 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 65744099 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||||||||||| || || ||||| || |||||| Sbjct 65744098 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 65744051 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || |||||||| || ||||| || || | |||| Sbjct 65744494 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 65744435 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| ||||| || ||||||||||| Sbjct 65744434 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTA 65744375 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| |||||||||| || | ||| | Sbjct 65744374 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 65744315 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || ||||| || |||||| Sbjct 65744314 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 65744279 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || | |||| ||||| ||||| || || Sbjct 65744020 GTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 65743961 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| ||||| || |||||||| || || ||| || || Sbjct 65743960 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATCTTAGCCTTC 65743901 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| ||||||||||||||| ||| | |||||||| || | ||| Sbjct 65743900 ACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTT 65743841 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 65743840 TTCACGAAGATCTGCAT 65743824 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610 ||| || || |||| ||||||||||||||||| || || | || || | || | | Sbjct 71370983 CAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGACAAAGTACGTCCA-T 71371041 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| || || || |||||| ||||| | | ||||||||| ||||| || ||||| || | Sbjct 71371042 CTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTCCTTAT 71371101 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | ||| || |||| | ||| | || || | || || |||| | ||| | | Sbjct 71371102 CCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGATTCAGCCTCGAGGGTGATGG 71371161 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | | ||||| ||||| || ||||| Sbjct 71371162 TCTTCCCCATAAGGGTTTTCACGAAAATCTGCAT 71371195 >seq1044 Length=11392 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || ||||| || || ||||| || || Sbjct 9191 CCACCTCTCAGACGCAGGACCAGGTGTAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 9250 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || ||| |||| || | ||||| |||||||| Sbjct 9251 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 9310 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||||||||| || ||| || || | | ||| | ||||| |||||||||| Sbjct 9311 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 9370 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||||||||||| || || ||||| || |||||| Sbjct 9371 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 9418 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || |||||||| || ||||| || || | |||| Sbjct 8975 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 9034 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| ||||| || ||||||||||| Sbjct 9035 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTA 9094 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| |||||||||| || | ||| | Sbjct 9095 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 9154 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || ||||| || |||||| Sbjct 9155 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 9190 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || | |||| ||||| ||||| || || Sbjct 9449 GTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 9508 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| ||||| || |||||||| || || ||| || || Sbjct 9509 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATCTTAGCCTTC 9568 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| ||||||||||||||| ||| | |||||||| || | ||| Sbjct 9569 ACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTT 9628 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 9629 TTCACGAAGATCTGCAT 9645 >seq334 Length=143122389 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 |||| ||| | ||| | || |||||||| || ||||| ||||| | |||| Sbjct 30029499 ACGCTGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCC 30029440 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| | || ||| |||| || | ||||| ||||| | |||||||| || Sbjct 30029439 ATCTTCTAGCTGCATGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGAGGATGCCTTCCTT 30029380 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || || | | ||| | ||||| ||||||||||||||| ||| | Sbjct 30029379 ATCCTGGATATTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGAT 30029320 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || ||||| || ||||| Sbjct 30029319 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 30029284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495955585212800