Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1724 367 2e-96 seq1685 361 8e-95 seq1399 129 8e-25 seq1115 107 3e-18 seq1162 89.7 7e-13 >seq1724 Length=455154 Score = 367 bits (406), Expect = 2e-96 Identities = 646/937 (69%), Gaps = 18/937 (2%) Strand=Plus/Plus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 49669 |||| |||||| |||||| | |||| ||| ||| | || |||| |||||||| Sbjct 265362 TTTAGAAGTCAGCATCTAAGGTAAAAGAATTTTCTGTTGGACTTGACACCACTCCCATCC 265421 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 | || || || || | | | || || || ||||| |||| | ||| ||||| | Sbjct 265422 TCTGATACTCTCCTCCTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 265476 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789 |||| || ||||| || | || ||| || |||| |||| ||| | | Sbjct 265477 CCATAAAGTCAAATGGGCTCTCTACCCCGAAAACCTTACTAAAACCCAGTTCCAGCCTAA 265536 Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849 ||| | || ||||| || || || ||||| | |||||||| || || || | Sbjct 265537 GTCTGCCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 265596 Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 49909 | | || | ||| |||| || ||||| ||||| || || |||| | ||||| | Sbjct 265597 TCATAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCTGAACAGCAT---TGATAATTG 265653 Query 49910 AT---CTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 49966 | || || | || || ||| |||| | | ||| |||||||| || || | Sbjct 265654 TTTCTCTCACTCTCTCCTCCGATGGTTTGTGCACCAGGTATTTGAACATCAAGCA-GCAA 265712 Query 49967 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 50026 |||| ||||| | |||||| ||||| ||||| ||||| || ||||||||||| || |||| Sbjct 265713 AATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTCGAAAACGTGAGGCCAGGCA 265772 Query 50027 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTT 50086 | || || || || || ||||| ||||| || ||||| || || ||||||||||| |||| Sbjct 265773 TCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTT 265832 Query 50087 CTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCACT 50143 ||||||| |||||||| |||| | || ||||| | || |||| ||||| Sbjct 265833 CTACTGCAGCAAAGGCTACAACACGTTCACCATAGATAGCCTCTTTGTCCCCAATCCAGC 265892 Query 50144 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203 || ||||| || ||||| || || |||||||||||||| ||||||||||||||| Sbjct 265893 ACAAGGCTCAATCTGCGTTCTTCTTGACGCAAGGCATCGTTTCGATGGCATTAAAGAGAA 265952 Query 50204 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263 | | |||| || |||||| | ||||| || || | |||||||||||||| |||| Sbjct 265953 ATTCCCTTTCTTTGGCATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 266012 Query 50264 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 50323 | |||||||| ||||| || || || | |||||||| | || || |||||||| ||| Sbjct 266013 GTATGTTTTCCATGGCAATTTGGAAGACATAGAAACAGCAGGCTTCTGTAATCTGAACTA 266072 Query 50324 CTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 50383 | | |||||| || | ||||||||||| ||||| || ||||| |||||||| || Sbjct 266073 TTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 266132 Query 50384 CCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATAT 50443 ||| | | | |||||||| | | || | ||| | || | ||| | | || | Sbjct 266133 CCAGAAGACGGGATATAAAATATCTCTCCTCGGGCTTCAGGGATTCCCAGTGCTGAATGT 266192 Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 | || || | || || || || ||||| || || |||||||||||||||||||| | Sbjct 266193 CCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCTGCCTTTTTATACATCT 266252 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 |||||| ||||| || | ||| ||||| | ||||| Sbjct 266253 GCCAGATATCATGGTACTCGATGGGGAAGACGACAAA 266289 >seq1685 Length=141252148 Score = 361 bits (400), Expect = 8e-95 Identities = 646/937 (69%), Gaps = 22/937 (2%) Strand=Plus/Minus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTT---CTTGAGACATAACTCCCATTT 49669 |||| |||||| |||||| | |||| ||| | || ||||| || |||||||| Sbjct 47457290 TTTAGAAGTCAGCATCTAAGGTAAAAGAATTCTGTTGGACTTGACACC--ACTCCCATCC 47457233 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 | || || | || || | | || || || ||||| |||| | ||| ||||| | Sbjct 47457232 TCTGATACTTGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 47457178 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789 ||| || ||||| || | || ||| || |||| |||| ||| || | Sbjct 47457177 ACATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 47457118 Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849 ||| || || ||||| || || ||| ||||| | |||||||| || || || | Sbjct 47457117 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 47457058 Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 49909 | || || | ||| | || || ||||| ||||| || || |||| | || || Sbjct 47457057 TCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTT 47456998 Query 49910 ATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAAT 49969 ||| || | || || || || | | ||||| |||||||| || || |||| Sbjct 47456997 CTCTCACTCTCTCCTCCGATAGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAAT 47456938 Query 49970 CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTA 50029 | |||| | |||||| ||||| ||||| | ||| |||||||||||||| || ||||| | Sbjct 47456937 C--AGTGTAAACCCTCATCTCTGCTAATAAATTCATTGGAAAACGTGAGGCCAGGCATCA 47456880 Query 50030 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTA 50089 | || || || || ||||| ||||| || ||||| || | ||||||||||| ||||||| Sbjct 47456879 GTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACTGGAAAAGAAGATGCCTTCTA 47456820 Query 50090 CTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCACTTTT 50146 |||| || ||||| |||| | || ||||| |||| |||| ||||| Sbjct 47456819 CTGCAGCGAAGGCTACAACACGTTCACCATAGGTGGCCTCTTTGTCCCCAATCCAGCGCA 47456760 Query 50147 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 50206 |||||||| |||||||| || ||||||||||||||||| |||||||| |||||| | | Sbjct 47456759 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATT 47456700 Query 50207 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 50266 |||| || |||||| | ||||| || || | |||||||||||||| ||||| | Sbjct 47456699 CCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 47456640 Query 50267 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 50326 ||||||| ||||| || || || || |||||||| | || || |||||||| ||| | Sbjct 47456639 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 47456580 Query 50327 TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386 | |||||| || | ||||||||||| ||||| || || || |||||||| || ||| Sbjct 47456579 GGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAACCA 47456520 Query 50387 ATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG---ATAT 50443 ||||| |||||||| | | || ||| | || ||||| || || || | Sbjct 47456519 GAACATGGGATATAAAATATCTCTCCCCGGGCTTCAG-GGATTCC---CAGTGCCAATGT 47456464 Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 | || || | || || || || ||||| || || ||||| ||||| |||||||| | Sbjct 47456463 CCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCT 47456404 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 |||||| |||| || | ||| || || || ||||| Sbjct 47456403 GCCAGATACCATGGTACTCGATGGGAAAGATGACAAA 47456367 Score = 201 bits (222), Expect = 2e-46 Identities = 379/551 (69%), Gaps = 10/551 (2%) Strand=Plus/Minus Query 49972 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 50031 ||||| | |||||| || || || | ||||| ||||||| ||||| || ||||| || Sbjct 130531224 CAGTGTAAACCCTCATCACTGCTGAAAAGTTCACTGGAAAATGTGAGGCCAGGCATCAGT 130531165 Query 50032 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACT 50091 || | || || ||||| ||||| | ||||| || |||||||||||| | | ||| ||| Sbjct 130531164 CCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACT 130531105 Query 50092 GCGGCAAAGGCAACAAGTCTCTCTCCAT----AACTGGCGCTGTCATGTATCCA-CTTTT 50146 ||||||||| ||| | ||||||| ||| | | ||| ||||| | Sbjct 130531104 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAAC-GTCTTTGTTCCCAATCCAACACAA 130531046 Query 50147 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 50206 || ||||| | |||||||| || ||||| ||||||||||| | |||||| |||| | | | Sbjct 130531045 GA-CCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAACGGCATTGAAGATAAATT 130530988 Query 50207 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 50266 |||| || |||||||| ||| | || || | ||||||| || || ||||| | Sbjct 130530987 CCCTTTCTTTGTTATCTTTA--ATATGCGTCAATAAGGAGACTATTTATGTCAGAATGTA 130530930 Query 50267 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 50326 ||||||| || || || || || || ||||| || | || |||||||| |||||| Sbjct 130530929 TGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATCTGAACTTCTT 130530870 Query 50327 TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386 | |||| |||| | || ||||||| | ||| || |||| |||||||| || |||| Sbjct 130530869 GAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCTGCAAAGAAAGCCA 130530810 Query 50387 ATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTT 50446 | ||| |||||||| | ||| | || | || | ||| | || || | Sbjct 130530809 GAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCCCAGTGCCAAATGTCCT 130530750 Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 50506 | || | || || || | | |||| || || ||||| | || |||||||| |||| Sbjct 130530749 TGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAGACCTCTACTTTCTTATACATTTTCC 130530690 Query 50507 AGATGTCATGA 50517 | || |||||| Sbjct 130530689 AAATATCATGA 130530679 >seq1399 Length=81552678 Score = 129 bits (142), Expect = 8e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| |||||||| ||||| || ||||| || || || || | Sbjct 9735778 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 9735719 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || |||||||||||||| ||||| ||||| ||||||| Sbjct 9735718 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 9735659 Query 50102 CAACAA 50107 | |||| Sbjct 9735658 CTACAA 9735653 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | ||||| || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 9733358 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 9733299 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || || || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 9733298 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 9733239 >seq1115 Length=110690730 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| |||||||||||||| | || |||||||||| | ||| Sbjct 66333963 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 66333904 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| ||||| | | || || ||||||| || Sbjct 66333903 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 66333844 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 66333843 TCCAGGTAAATAGC 66333830 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| |||||||| || |||||| ||| | || || || || ||||| | Sbjct 66347487 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 66347428 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| |||||| |||||||| ||||| || || || || || ||||| | | | || | Sbjct 66347427 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCCTGAGAACAGTTT 66347368 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 66347367 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 66347317 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 66344670 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 66344611 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 66344610 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATTGGGGCAATAAGTAAA 66344551 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 66344550 CTGTTTCTTATACCATA 66344534 >seq1162 Length=100215132 Score = 89.7 bits (98), Expect = 7e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || ||||| ||| | || || || || ||| | | ||| ||||| || Sbjct 7502475 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCGGTGTCATCCAAGGCTTGAACTTCTTC 7502416 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||||||| | || ||| | || ||||| || |||| ||| || | || || Sbjct 7502415 TATTTCTGGATAAAAAATCTGTTCGCAAATGAGCTGTGCAATTCGATCACCTTTTTTGAC 7502356 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| ||||| || | || || | ||||| ||||||||||| Sbjct 7502355 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 7502296 Query 47883 GTCTATTACACCACCTCCTATATCAAT 47909 ||||| |||||| |||||| |||||| Sbjct 7502295 ATCTATGACACCAGCTCCTACATCAAT 7502269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718111822353760