Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1685 268 9e-67 seq1724 264 1e-65 seq1399 120 3e-22 >seq1685 Length=141252148 Score = 268 bits (296), Expect = 9e-67 Identities = 502/730 (69%), Gaps = 17/730 (2%) Strand=Plus/Minus Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631 || ||||| | ||||| | | ||||| | |||||||||||||| ||| |||| Sbjct 47457242 ACTCCCATCCTCTGATACTTGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGT 47457188 Query 13632 GATATATTTTCCATAAAATCAAATGGATT-TATTGACATAAACACTTTATCACAACCTAG 13690 || ||||| | |||||| |||||||| | | | | ||| ||| | | |||| || Sbjct 47457187 GAAATATTCTACATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA-AACCCAG 47457129 Query 13691 TTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13750 ||| | | | ||| || || | ||||||||| ||||| ||||| | |||||||| Sbjct 47457128 TTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCAT 47457069 Query 13751 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13810 || || || || ||||| | | ||| | ||||| | |||||| ||||| | Sbjct 47457068 CCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCAT- 47457010 Query 13811 TTTTATAATAATTGTAATAA---TCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 13867 | ||||| ||| | | |||| | || | | | || ||||| || || Sbjct 47457009 --TGATAATTATTTCTCTCACTCTCTCCTCCGATAGTTTGTGTACCAGGTGTTTGAACAT 47456952 Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 || || ||||||||| | || ||||||||||| ||||||| ||| || ||||| || Sbjct 47456951 CAAGCAAGCAAAATCAGTGTAAA--CCCTCATCTCTGCTAATAAATTCATTGGAAAACGT 47456894 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987 | || ||||||| ||||||||| || | ||| ||||| | ||||| || | |||||| Sbjct 47456893 GAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACTGGAAAA 47456834 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 ||| || || || |||||||| || |||| | ||||| ||| | | || | ||||| Sbjct 47456833 GAAGATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTGGCCTCTTTGTC 47456774 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 | ||||| ||||| || | || || || | | || ||| |||||||| || Sbjct 47456773 CCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGC 47456714 Query 14108 ATTAAATAAATATTCCTTCTCTTT-AGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 ||| || | | ||||| | ||||| || ||| | |||| || |||||||| | |||| Sbjct 47456713 ATTGAAGAGAAATTCCCTTTCTTTGAGATCTTTGA-TGTAAGTGTCAATAAGGAGACTAT 47456655 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 |||||||||| |||||||||||||| || || || || ||||| || || | ||||| | Sbjct 47456654 ACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTG 47456595 Query 14227 ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286 || ||| | ||||| || ||||||||||||| ||||| ||||| || | Sbjct 47456594 TAATCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCGCTTG 47456535 Query 14287 CTGCAAAAAA 14296 ||||||| || Sbjct 47456534 CTGCAAAGAA 47456525 Score = 141 bits (156), Expect = 9e-29 Identities = 299/439 (68%), Gaps = 9/439 (2%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| | ||| || | |||||||| || || | |||||| | |||||||| | Sbjct 130531236 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTGAAAAGTTCACTGGAAAATGTGAGG 130531177 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||||| |||| |||| || | ||| ||||| ||||| || || |||||||| Sbjct 130531176 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 130531117 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 | | || ||| ||||| ||| | ||||||||| | | | ||||||| Sbjct 130531116 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 130531057 Query 14052 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 ||||| | || |||| | | || || || | | | | || ||||||| ||||| Sbjct 130531056 ATCCAACA-CAAGACCCAACCTGCCTTCTTCTTGACACAGGC-ATCGTTTCAACGGCATT 130530999 Query 14111 AAATAAATATTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACA 14169 || | | ||||| | ||||| || ||| || |||| |||||||| | |||| | Sbjct 130530998 GAAGATAAATTCCCTTTCTTTGTTATCTTTAA---TATGCGTCAATAAGGAGACTATTTA 130530942 Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACC 14229 | ||||| ||||||||||| ||||| || || || ||||| ||||| | ||| | Sbjct 130530941 TGTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAA 130530882 Query 14230 ATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289 || ||||| |||| ||| |||| ||||||| | ||| ||||||| |||| Sbjct 130530881 TCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCTG 130530822 Query 14290 CAAAAAATGCC--AATATG 14306 |||| || ||| |||||| Sbjct 130530821 CAAAGAAAGCCAGAATATG 130530803 >seq1724 Length=455154 Score = 264 bits (292), Expect = 1e-65 Identities = 530/778 (68%), Gaps = 16/778 (2%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| ||||||| | |||| ||| || | || | | || | || ||||| | Sbjct 265364 TAGAAGTCAGCATCTAAGGTAAAAGAATTTTC-TGTTGGACTTGACACCACTCCCATCCT 265422 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | |||| | |||||||||||||| ||| |||||| ||||| || Sbjct 265423 CTGATACTCTCCTCCTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCTC 265477 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||||| |||||||| | | | || || ||| | |||| ||||| | | Sbjct 265478 CATAAAGTCAAATGGGCTCTCTACCCCGAAAACCTTACTAAAACCCAGTTCCAGCCTAAG 265537 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 ||| | || | ||||||||| |||| ||||| | |||||||| || || || || Sbjct 265538 TCTGCCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 265597 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 | ||| | | || | ||||| | |||||| ||||| | | ||||| | Sbjct 265598 CATAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCTGAACAGCAT---TGATAATTGT 265654 Query 13823 TGTAATAA---TCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 | | | |||| | || || | || | ||| || || || || ||||| Sbjct 265655 TTCTCTCACTCTCTCCTCCGATGGTTTGTGCACCAGGTATTTGAACATCAAGCA-GCAAA 265713 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 |||||| || | ||||||||||| ||||||||||| || ||||| || | || ||||| Sbjct 265714 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTCGAAAACGTGAGGCCAGGCAT 265773 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 || ||||||||| || | ||| ||||| | ||||| || ||||||||||| || || || Sbjct 265774 CAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTC 265833 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGAT-GCTTTTTTGTTCGATATCCATT 14058 ||||||||||| |||| | ||||| ||| | ||| || | ||||| | ||||| Sbjct 265834 TACTGCAGCAAAGGCTACAACACGTTCACCATA-GATAGCCTCTTTGTCCCCAATCCAGC 265892 Query 14059 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14118 || || || | || || || | || ||| ||||| || |||||||| | | Sbjct 265893 ACAAGGCTCAATCTGCGTTCTTCTTGACGCAAGGCATCGTTTCGATGGCATTAAAGAGAA 265952 Query 14119 ATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 14178 ||||| | ||||| | | | ||||| || |||||||| | |||||||||||||| | Sbjct 265953 ATTCCCTTTCTTTGGCATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 266012 Query 14179 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTT 14238 ||||||||||||| || || || || |||| || || | ||||| | || ||| Sbjct 266013 GTATGTTTTCCATGGCAATTTGGAAGACATAGAAACAGCAGGCTTCTGTAATCTGAACTA 266072 Query 14239 CCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 | ||||| || ||||||||||||| ||||| |||||||| |||||||| || Sbjct 266073 TTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 266130 >seq1399 Length=81552678 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 9735778 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 9735719 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| || || || ||||||||||| | Sbjct 9735718 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 9735659 Query 14014 CTATTAATCGTTCTCC 14029 ||| | ||||| || Sbjct 9735658 CTACAACACGTTCACC 9735643 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 9738054 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 9737996 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 9737995 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 9737936 Query 13643 CATAAAATCAAATGGATT 13660 |||||| |||||||| || Sbjct 9737935 CATAAAGTCAAATGGGTT 9737918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479623155445600