Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1724 233 2e-56 seq1685 230 2e-55 seq1399 114 1e-20 >seq1724 Length=455154 Score = 233 bits (258), Expect = 2e-56 Identities = 523/776 (67%), Gaps = 12/776 (2%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| ||||||| | |||| ||| || | || | | || | || ||||| | Sbjct 265364 TAGAAGTCAGCATCTAAGGTAAAAGAATTTTC-TGTTGGACTTGACACCACTCCCATCCT 265422 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | |||| | ||||| |||||||| ||| |||||| ||||| || Sbjct 265423 CTGATACTCTCCTCCTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCTC 265477 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||||| || ||||| | | | || || ||| | |||| ||||| | | Sbjct 265478 CATAAAGTCAAATGGGCTCTCTACCCCGAAAACCTTACTAAAACCCAGTTCCAGCCTAAG 265537 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||| | || | ||||||||| |||| ||||| | |||||||| || || || || Sbjct 265538 TCTGCCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 265597 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA- 13609 | ||| | | ||| | ||||| | |||||| ||||| | | | || | Sbjct 265598 CATAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTGTTTC 265657 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13669 ||| | | | || | || || | || | ||| || || || || ||||||| Sbjct 265658 TCTCACTC-TCTCCTCCGATGGTTTGTGCACCAGGTATTTGAACATCAAGCA-GCAAAAT 265715 Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729 |||| || | ||||||||||| ||||||||||| || ||||| || | || ||||||| Sbjct 265716 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTCGAAAACGTGAGGCCAGGCATCA 265775 Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789 ||||||||| || | ||| ||||| | || || || ||||||||||| || || || | Sbjct 265776 GTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCTA 265835 Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGAT-GCTTTTTTGTTTGATATCCATTTT 13848 |||||||||| |||| | ||||| ||| | ||| || | ||||| ||||| Sbjct 265836 CTGCAGCAAAGGCTACAACACGTTCACCATA-GATAGCCTCTTTGTCCCCAATCCAGCAC 265894 Query 13849 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGT 13908 || || || | || || || | || ||| |||||||| ||||| || | | | Sbjct 265895 AAGGCTCAATCTGCGTTCTTCTTGACGCAAGGCATCGTTTCGATGGCATTAAAGAGAAAT 265954 Query 13909 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 13968 ||| | ||||| | | | ||||| || |||||||| | |||||||||||||| ||| Sbjct 265955 TCCCTTTCTTTGGCATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGT 266014 Query 13969 ATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC 14028 |||||||| || || || || || |||| ||||| | ||||||| || || Sbjct 266015 ATGTTTTCCATGGCAATTTGGAAGACATAGAAACAGCAGGCTTCTGTAATCTGAACTATT 266074 Query 14029 GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 | ||||| || |||| |||||||| || || |||||||| |||||||| || Sbjct 266075 TGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 266130 >seq1685 Length=141252148 Score = 230 bits (254), Expect = 2e-55 Identities = 493/728 (68%), Gaps = 13/728 (2%) Strand=Plus/Minus Query 13360 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGT 13419 || ||||| | ||||| | | ||||| | ||||| |||||||| ||| |||| Sbjct 47457242 ACTCCCATCCTCTGATACTTGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGT 47457188 Query 13420 GATATATTTTCCATAAAATCGAATGGATT-TGTTGACATAAACACTTTATCACAACCTAG 13478 || ||||| | |||||| || ||||| | | | | ||| ||| | | |||| || Sbjct 47457187 GAAATATTCTACATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA-AACCCAG 47457129 Query 13479 TTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13538 ||| | | | ||| || || | ||||||||| ||||| ||||| | |||||||| Sbjct 47457128 TTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCAT 47457069 Query 13539 ACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13598 || || || || ||||| | | || | ||||| | |||||| ||||| | Sbjct 47457068 CCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATT 47457009 Query 13599 GTTTATAATAA-TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTA 13657 | | || || ||| | | | || | || | | | || ||||| || || | Sbjct 47457008 GATAATTATTTCTCTCACTC-TCTCCTCCGATAGTTTGTGTACCAGGTGTTTGAACATCA 47456950 Query 13658 AACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTA 13717 | || ||||||||| | || ||||||||||| ||||||| ||| || ||||| || | Sbjct 47456949 AGCAAGCAAAATCAGTGTAAA--CCCTCATCTCTGCTAATAAATTCATTGGAAAACGTGA 47456892 Query 13718 ATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGA 13777 || ||||||| ||||||||| || | ||| ||||| | || || || | |||||||| Sbjct 47456891 GGCCAGGCATCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACTGGAAAAGA 47456832 Query 13778 ATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTG 13837 | || || || |||||||| || |||| | ||||| ||| | | || | ||||| Sbjct 47456831 AGATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTGGCCTCTTTGTCCC 47456772 Query 13838 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCAT 13897 ||||| ||||| || | || || || | | || ||| ||||| || |||| Sbjct 47456771 CAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCAT 47456712 Query 13898 TGAATAAATGTTCCTTCTCTTT-AGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956 |||| | | |||| | ||||| || ||| ||||| || |||||||| | |||||| Sbjct 47456711 TGAAGAGAAATTCCCTTTCTTTGAGATCTT-TGATGTAAGTGTCAATAAGGAGACTATAC 47456653 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016 |||||||| ||||||||||| || || || || || ||||| ||||| | ||||||| Sbjct 47456652 ATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTA 47456593 Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076 || || | ||||| || |||| |||||||| || || ||||| || ||| Sbjct 47456592 ATCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCGCTTGCT 47456533 Query 14077 GCAAAAAA 14084 ||||| || Sbjct 47456532 GCAAAGAA 47456525 Score = 129 bits (142), Expect = 6e-25 Identities = 296/439 (67%), Gaps = 9/439 (2%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| | ||| || | |||||||| || || | |||||| | |||||||| | Sbjct 130531236 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTGAAAAGTTCACTGGAAAATGTGAGG 130531177 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||||| |||| |||| || | ||| ||||| || || || || |||||||| Sbjct 130531176 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 130531117 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 | | || ||| ||||| ||| | ||||||||| | | | |||||| Sbjct 130531116 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 130531057 Query 13840 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||| | || |||| | | || || || | | | | || ||||| | ||||| Sbjct 130531056 ATCCAACA-CAAGACCCAACCTGCCTTCTTCTTGACACAGGC-ATCGTTTCAACGGCATT 130530999 Query 13899 GAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACA 13957 ||| | | |||| | ||||| || ||| || |||| |||||||| | |||| | Sbjct 130530998 GAAGATAAATTCCCTTTCTTTGTTATCTTTAA---TATGCGTCAATAAGGAGACTATTTA 130530942 Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14017 | ||||| ||||||||||||||||| || || || ||||| || || | ||||| Sbjct 130530941 TGTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAA 130530882 Query 14018 ATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077 || || || |||| ||| |||||||||||| | || ||||||| |||| Sbjct 130530881 TCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCTG 130530822 Query 14078 CAAAAAATGCC--AATATG 14094 |||| || ||| |||||| Sbjct 130530821 CAAAGAAAGCCAGAATATG 130530803 >seq1399 Length=81552678 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 9735778 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 9735719 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| || || || ||||||||||| | Sbjct 9735718 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 9735659 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | ||||| || Sbjct 9735658 CTACAACACGTTCACC 9735643 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 9738054 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 9737996 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 9737995 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 9737936 Query 13431 CATAAAATCGAATGGATT 13448 |||||| || ||||| || Sbjct 9737935 CATAAAGTCAAATGGGTT 9737918 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 9733351 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 9733292 Query 13990 AAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | ||||||| Sbjct 9733291 AAGCCATAGAAACAGCGGGCTTCTG 9733267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478484204417760