Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1685 138 2e-27 seq1724 136 6e-27 >seq1685 Length=141252148 Score = 138 bits (152), Expect = 2e-27 Identities = 493/759 (65%), Gaps = 29/759 (4%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||||||| ||| |||| || ||| | ||||| || ||||| |||| ||||| ||| Sbjct 47456376 TTTCCCATCGAGTACCATGGTATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGG 47456435 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || ||| ||||| || |||||||||||| | | | ||||| | | |||| Sbjct 47456436 ACCACCGAGGAGGTGGACCTGTCCAAGGACATTGGC-ACTGGGAATCCC-------TGAA 47456487 Query 125118 ACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 | | ||||| |||||||| || || ||| |||||||| | |||||| || Sbjct 47456488 GCCCGGGGAGAGATATTTTATATCCCATGTTCTGGTTTTCTTTGCAGCAAGCGATGGCAT 47456547 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGT 125232 || || || ||| || || ||||| ||| |||| | ||| |||| | | Sbjct 47456548 AGTAAATGAAAATTTGGTGGAGCGATTTAGCCAAATAGTTCAG-ATTACAGAAGCCCGCT 47456606 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || || || |||||||| || || ||| | || || |||||||| | || | Sbjct 47456607 GTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTTA 47456666 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACG 125351 |||||| ||||| |||| ||| | || || ||||| || || || || ||| Sbjct 47456667 TTGACACTTACATCAAAGATCT-CAAAGAAAGGGAATTTCTCTTCAATGCCATTGAAACG 47456725 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 |||| | | | || ||||| | |||| | || ||||| | ||| | || | Sbjct 47456726 ATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCC 47456785 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 | || | || | | || || ||||| || ||||| |||||||||||||| || | Sbjct 47456786 ACCTATGGTGAACGTGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCCAGTTCT 47456845 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 ||||| | || || ||||||||||| || ||||| ||||| || || ||| || Sbjct 47456846 TTTGCATCGATATTGTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAAT 47456905 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAAC 125591 || ||||| |||| ||||| ||||| ||| |||| | | || || | ||| Sbjct 47456906 GAATTTATTAGCAGAGATGAGGGTTTACAC--TGATTTTG-CTTGCT--TGATGTTCAAA 47456960 Query 125592 TATCTGCGTCCCGAGTGCAGATCCAGC-GATGAAAAGGTCATCAACATTGTAACCGATGC 125650 | ||| || | | | | | | || || | || | | || | | | |||| Sbjct 47456961 CACCTG-GTACACA------AACTATCGGAGGAGAGAGTGAGAGAAATAATTATCAATGC 47457013 Query 125651 CGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAA 125710 || ||||||||| || || || ||||| || | || || | | ||||| ||||| Sbjct 47457014 TGTTCAGATAGAACAGGAATTCCTCACCGAGGCCTTGCCTGTGAAGCTCATTGGGATGAA 47457073 Query 125711 CTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGA 125749 |||| |||||| | ||||| |||||||||||||| Sbjct 47457074 TTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGA 47457112 >seq1724 Length=455154 Score = 136 bits (150), Expect = 6e-27 Identities = 380/577 (66%), Gaps = 7/577 (1%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || |||||| ||| ||||| || ||| | ||||| |||||||| |||| ||||| ||| Sbjct 266280 TTCCCCATCGAGTACCATGATATCTGGCAGATGTATAAAAAGGCAGAGGCTTCCTTCTGG 266221 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || ||| ||||| || |||||||||||| | | | ||||| | | | | || Sbjct 266220 ACCACCGAGGAGGTGGACCTGTCCAAGGACATTCAGCACTGGGAATCCCTGAAGCCCGA- 266162 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| || | |||||||| | || ||| |||||||| | ||||| || || Sbjct 266161 --GGAGAGATATTTTATATCCCGTCTTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTA 266104 Query 125178 AACGACAATCTGTTGACACGA-TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTT 125236 || || ||| || || ||| || | || |||| | ||| |||| | | || || Sbjct 266103 AATGAAAATTTGGTGGAGCGATTTAGCCAAATAGTTCA-GATTACAGAAGCCTGCTGTTT 266045 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 || | |||||||| || || ||| | || || |||||||| | || ||||| Sbjct 266044 CTATGTCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGA 265985 Query 125297 CATGTACATTCGCGATCCGCAACGTAA-ACACATGCTCTTTAACGCAATCGACACGGTGC 125355 || ||||| ||| | ||| | || | | |||||||| || ||||| ||| ||| Sbjct 265984 CACTTACATCAAAGATGC-CAAAGAAAGGGAATTTCTCTTTAATGCCATCGAAACGATGC 265926 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | | || || || | || | | | ||||| | ||| | || || | Sbjct 265925 CTTGCGTCAAGAAGAACGCAGATTGAGCCTTGTGCTGGATTGGGGACAAAGAGGCTATCT 265866 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 | | || | | || || || || || ||||| |||||||||||||| ||| ||||| Sbjct 265865 ATGGTGAACGTGTTGTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCCGGTTCTTTTG 265806 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 | | || || ||||||||||| || ||||| ||||| || || ||| || || Sbjct 265805 CATCGATATTGTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCGAATGAAC 265746 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||| |||| ||||| |||||||||| ||||| Sbjct 265745 TTATTAGCAGAGATGAGGGTTTACACTGTGATTTTGC 265709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740897241511840