Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1399 95.1 8e-15 seq1044 89.7 3e-13 >seq1399 Length=81552678 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| ||||| | || ||||||||||| |||||||| |||||||| | || || Sbjct 71370983 CAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGACAAAGTACGTCCATC 71371042 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | |||||| || | || || ||||| || || Sbjct 71371043 TTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 71371102 Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 | | | ||| ||||| ||| ||||| || || || | | || || || || Sbjct 71371103 CTGGATCTTGGCC---TTTACATTTTCTATCGTATCCGAGGATTCAGCCTCGAGGGTGAT 71371159 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || ||| |||| ||||| |||||||| ||||| || Sbjct 71371160 GGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATTTT 71371198 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | |||| |||| ||||| || |||||||| || || ||||| ||||| Sbjct 65744051 ACCACCTCTCAGACGCAGGACCAGATGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGA 65743992 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || | || |||| ||||| || ||| || | | |||||||| | ||| Sbjct 65743991 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 65743932 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 |||||||| || || ||| |||| | || ||| || ||||| |||| | Sbjct 65743931 AATGCCTTCCTTATCCTGGATCTTAGCCT---TCACATTTTCGATGGTGTCACTGGGCTC 65743875 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || || || || || || ||||||||||| ||||| || ||||| || Sbjct 65743874 CACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTCACGAAGATCTGCATTTT 65743821 >seq1044 Length=11392 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | |||| |||| ||||| || |||||||| || || ||||| ||||| Sbjct 9418 ACCACCTCTCAGACGCAGGACCAGATGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGA 9477 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || | || |||| ||||| || ||| || | | |||||||| | ||| Sbjct 9478 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 9537 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 |||||||| || || ||| |||| | || ||| || ||||| |||| | Sbjct 9538 AATGCCTTCCTTATCCTGGATCTTAGCCT---TCACATTTTCGATGGTGTCACTGGGCTC 9594 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || || || || || || ||||||||||| ||||| || ||||| || Sbjct 9595 CACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTCACGAAGATCTGCATTTT 9648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318709672876632