Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1724 232 6e-56 seq1685 228 7e-55 seq1162 96.9 3e-15 seq254 95.1 1e-14 seq1399 82.4 7e-11 >seq1724 Length=455154 Score = 232 bits (256), Expect = 6e-56 Identities = 510/759 (67%), Gaps = 19/759 (3%) Strand=Plus/Plus Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 |||| | || |||||||| ||| | || ||||||| | || ||||| || || | || Sbjct 265538 TCTGCCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 265597 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 | ||||| || || || | || | | |||||| | ||| || | ||||| | | || Sbjct 265598 CATAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTGTTTC 265657 Query 13102 TCTTATTACGTTCTCTAATGGAGGATTTGAT----AGATGCTTAAACATCATACATGCAA 13157 ||| | | | ||| |||| |||| || | || ||||||| || |||| Sbjct 265658 TCTCACTCTCTCCTCCGATGG----TTTGTGCACCAGGTATTTGAACATCAAGCA-GCAA 265712 Query 13158 AATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCA 13217 |||||||||| || || |||||||| || || || || || ||||| || || || |||| Sbjct 265713 AATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTCGAAAACGTGAGGCCAGGCA 265772 Query 13218 TAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTT 13277 | || |||||||| || | ||| ||||| | ||||| ||||| ||||| || || |||| Sbjct 265773 TCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTT 265832 Query 13278 CAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTATCCAC 13336 | ||||| ||||| |||| |||| | ||||||||| || | ||| | | ||||| Sbjct 265833 CTACTGCAGCAAAGGCTA-CAACACGTTCACCATAGATAGCCTCTTTGTCCCCAATCCAG 265891 Query 13337 TTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396 ||| || | ||| || | || ||||| ||| |||| || || ||||| | | Sbjct 265892 CACAAGGCTCAATCTGCGTTCTTCTTGACGCAAGGCATCGTTTCGATGGCATTAAAGAGA 265951 Query 13397 TAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAA 13456 | | |||| || ||| || ||||| || || | | ||||||||||| ||| Sbjct 265952 AATTCCCTTTCTTTGGCATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAA 266011 Query 13457 TGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACT 13516 || || |||||||| || |||||||| |||| ||||| | || |||| | ||||||| Sbjct 266012 TGTATGTTTTCCATGGCAATTTGGAAGACATAGAAACAGCAGGCTTCTGTAATCTGAACT 266071 Query 13517 TCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaa 13576 | ||||| || | || ||||| || ||||| || ||||| || ||||| ||| Sbjct 266072 ATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAA 266131 Query 13577 GCAAGTATGTGCTTAATAAAttttttttC----GTTTTCTGACAACTTTAACCAATCTGG 13632 | || | | ||||| | | | || | ||| | | | ||| | | Sbjct 266132 ACCAGAAGACGGGATATAAAATATCTCTCCTCGGGCTTCAGGGA----TTCCCAGTGCTG 266187 Query 13633 AAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 || || || || | || |||||||| |||||| || ||||| | ||||| ||||| Sbjct 266188 AATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCTGCCTTTTTATA 266247 Query 13693 CATCATCCATATATCCTTATAAACAATGGGAAACACAAC 13731 |||| ||| ||||| | || | ||||| || || || Sbjct 266248 CATCTGCCAGATATCATGGTACTCGATGGGGAAGACGAC 266286 >seq1685 Length=141252148 Score = 228 bits (252), Expect = 7e-55 Identities = 577/869 (66%), Gaps = 20/869 (2%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| | || ||||| | ||||| ||||| || |||| | |||||||| | | Sbjct 47457230 TGATACTTGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTCAGT-----GAAATATTCTAC 47457176 Query 12923 ATAAAATCGAAAGGATTTT-TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAA 12981 ||||| || || || | | | | | | || | | |||| | ||| || | | Sbjct 47457175 ATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCC-AGTTCCAGCATAAG 47457117 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 |||||| || |||||||| ||||| || ||||||| | || ||||| || || | || Sbjct 47457116 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 47457057 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 ||||||| || || || | || | | |||||| | ||| || | ||||| ||| || Sbjct 47457056 CACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTTC 47456997 Query 13102 TCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATC 13161 ||| | | | ||| || | | | || || || ||||||| || |||||||| Sbjct 47456996 TCTCACTCTCTCCTCCGATAGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 47456937 Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221 | ||| || || |||||||| || || | || || ||||| || || || ||||| || Sbjct 47456936 A--GTGTAAACCCTCATCTCTGCTAATAAATTCATTGGAAAACGTGAGGCCAGGCATCAG 47456879 Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAAC 13281 |||||||| || | ||| ||||| | ||||| |||| ||||| || || ||||| || Sbjct 47456878 TCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACTGGAAAAGAAGATGCCTTCTAC 47456819 Query 13282 TGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTC 13340 ||| || || |||| |||| | ||||||||| || | ||| | | ||||| Sbjct 47456818 TGCAGCGAAGGCTA-CAACACGTTCACCATAGGTGGCCTCTTTGTCCCCAATCCAGCGCA 47456760 Query 13341 TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400 |||||| | ||| || | || || || ||| |||| || || || || | | | | Sbjct 47456759 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATT 47456700 Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 |||| || ||| || ||||| || || | | ||||||||||| ||||| | Sbjct 47456699 CCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 47456640 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGG 13520 | |||||||| || |||||||| ||||| ||||| | || |||| | ||||||| Sbjct 47456639 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 47456580 Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAA 13580 | ||||| || | || ||||| || ||||| || || || || ||||| ||| | | Sbjct 47456579 GGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAACCA 47456520 Query 13581 GTATGTGCTTAATAAAttttttttC----GTTTTCTGACAACTTTAACCAATCTGGAAAA 13636 | | || ||||| | | | || | ||| | | || || | || Sbjct 47456519 GAACATGGGATATAAAATATCTCTCCCCGGGCTTCAGGGA--TT---CCCAGTGCCAATG 47456465 Query 13637 TCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATC 13696 || || || | || |||||||| |||||| || ||||| | ||||||||||||||| Sbjct 47456464 TCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATC 47456405 Query 13697 ATCCATATATCCTTATAAACAATGGGAAA 13725 ||| ||| | | || | |||||||| Sbjct 47456404 TGCCAGATACCATGGTACTCGATGGGAAA 47456376 >seq1162 Length=100215132 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| || | Sbjct 56822256 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 56822315 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || | |||||| || || ||||| | Sbjct 56822316 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 56822375 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 56822376 CCACCACTCTTTCCCC 56822391 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| |||||| Sbjct 56811358 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 56811417 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| |||||||||| Sbjct 56811418 ATAAAATCAAAAGGATTTT 56811436 >seq254 Length=152096393 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 5421 GTACCTGTGAACGCTCATAACAGTGACGAAAAACATTCCACTGTAAAACCCCACATAATA 5480 |||||||| || ||||| | |||| ||||||||| | |||||| || || | ||||| Sbjct 113146423 GTACCTGTCCACACTCATGAGGGTGATGAAAAACATGCTACTGTAGAAGCCAATGTAATA 113146482 Query 5481 AAATCCAGACACTATTTTACACGTAAAATTTCCAAATATCCACTGATCTAACTGATAATG 5540 ||| || ||||| | ||| ||| | | | | ||||| | ||||||||||| |||||| | Sbjct 113146483 AAAGCCGGACACCACTTTGCACATTACAGTCCCAAACACCCACTGATCTAGCTGATAGTA 113146542 Query 5541 TATTTGAAATGGAAATGACATAACAAATAA 5570 | ||||| || || || | ||||| || Sbjct 113146543 GGTCTGAAAGGGGAAGGAGAAGACAAAAAA 113146572 >seq1399 Length=81552678 Score = 82.4 bits (90), Expect = 7e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || ||||| || || || ||| ||||||||||| ||||| || |||||||| || ||||| Sbjct 9733351 ATGTAAGTGTCAAT-AAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 9733293 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| | ||||||||| Sbjct 9733292 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 9733254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430890563576568