Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq628 183 4e-41 seq565 132 7e-26 >seq628 Length=118206036 Score = 183 bits (202), Expect = 4e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || |||| |||||| ||||| || |||| || |||||||| ||| Sbjct 29169638 GTCTGGAACAACTGCTCATCACCCCATTCGGGATGCTCCTGTTTAAGCACATCGCATACT 29169579 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| |||||||| || || |||||||| |||||||||||||| ||||| Sbjct 29169578 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 29169519 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | || | || || || |||| ||||| |||||||| | Sbjct 29169518 ACCTCCTGCCCCACAGCAAACCGTAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 29169459 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 |||| ||||||||| | ||| |||||||| || || ||||| |||| Sbjct 29169458 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 29169410 Score = 168 bits (186), Expect = 9e-37 Identities = 231/323 (72%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 8653 CTTGAGGAGCTCCTTATTGGGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCT 8712 ||||| |||||| || ||||| | ||| | || || ||||| || || ||||| | Sbjct 29171690 CTTGATGAGCTCTGGATCTGGAACACTGAATGACGCAAAGGGACAGCCCTTCACGTTATT 29171631 Query 8713 ACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAA 8772 |||| |||||||| || | ||| | |||| ||| ||| ||||| ||||| || || Sbjct 29171630 GCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAA 29171571 Query 8773 GGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGA 8832 ||||| || |||||||| | || || || || || || |||| || ||||| | ||| Sbjct 29171570 AGTGCTTGGCTTCCAGTAGTCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGA 29171511 Query 8833 AAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTC 8892 || || || || | || | ||| ||||||| |||||||| | ||||| |||||||| Sbjct 29171510 GAATGGTGCTCCAACTTCTACCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTC 29171451 Query 8893 CACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTC 8952 |||| | | | |||| ||||||||| |||||||| || || || || | || Sbjct 29171450 TACCAGAAGGGCAGGATACAGCTCCACAGCATCGATGTCACCATAGAGTGCTTCCAACTC 29171391 Query 8953 GGCAGCGATTTCCTTTTCTCCTG 8975 |||| |||||||||||||||| Sbjct 29171390 TGCAGACATTTCCTTTTCTCCTG 29171368 Score = 125 bits (138), Expect = 1e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 29168476 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 29168417 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| | ||| |||||||||||||| Sbjct 29168416 AAACTGATGTGTGAAGTGCTGGGCAAAGAATGCAAACATCACGTTTGTGCCCTGGGGATC 29168357 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| | || | |||||| |||||||||| | | ||| || || | Sbjct 29168356 AGGGATGAACTTTCTTCTTAGAAGAAACTTTTCCACAATTTCATTTGAATCAGGAAGCTG 29168297 Query 10208 ttttttACCTGGTGAACGAGAA 10229 |||||||||| || ||||| Sbjct 29168296 CTTTTTACCTGAAAAATGAGAA 29168275 Score = 109 bits (120), Expect = 8e-19 Identities = 118/154 (77%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 10287 TCACCTTTGAC-CCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGC 10345 ||||||||||| |||||| ||||| || || || | ||| || ||||| || || | Sbjct 29167865 TCACCTTTGACACCCAAG-GGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTGGT 29167807 Query 10346 GTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGAT 10405 ||||||||||| || ||||| |||||||||||| ||| | ||||| ||||||| | Sbjct 29167806 ATAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACGTTGTAAGT 29167747 Query 10406 GGGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || ||||||||||||| ||||| ||||| Sbjct 29167746 TGGTGGACTGTCAATCAAATGTGATCTGGCTGAA 29167713 Score = 100 bits (110), Expect = 4e-16 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | ||||| ||||| || | ||||||||| || || | Sbjct 29170232 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 29170173 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCT 9439 | | ||| ||||||||||| | || ||| || ||| || || | || ||| | Sbjct 29170172 AGCAATATAGAATTGTTGTAGATAAACTGTTGAT--AGTTGTAGTTCTGGTCATGAATTT 29170115 Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499 ||| | || |||| || | |||||||||||| | |||||||||| | | |||| Sbjct 29170114 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTGTTAAACTCAGCAGCAATAC 29170055 Query 9500 GATTTTGGTACTGGAA 9515 |||||||||||||||| Sbjct 29170054 GATTTTGGTACTGGAA 29170039 >seq565 Length=117381234 Score = 132 bits (146), Expect = 7e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||||||||| ||| |||| || ||||| || ||||| || |||||||| |||| | Sbjct 101538684 TCTTGACGATGTTAAAGCCCATCTCGCCGCCAAATGTGCTCGGCTTCCAGTACTCCGGAG 101538625 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||||| ||| | | ||| || ||||||||||| |||||||| | ||| | || | Sbjct 101538624 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 101538565 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||| | ||| ||| || |||||| | | | ||||| ||| ||||||| Sbjct 101538564 TCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAAGAAGCAGTCCGGGGTAAAACTCCA 101538505 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || |||||||| || | || | || || || || ||||| |||||| Sbjct 101538504 ACGCATCAATGTCTCCATACAACTCCTCCAACTCCGCTGCCATCTCCTTCTCTCCT 101538449 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083 || || |||||||| |||| | || |||||| | || || || |||| | ||| Sbjct 101527798 GTACTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTT 101527741 Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143 | || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| |||| Sbjct 101527740 TGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGATGTTGGTGCCTTGGG 101527681 Query 10144 GATCGGGAGTGAAGGTCCTCC 10164 | || || |||| |||||| Sbjct 101527680 GGTCAGGTATGAACTTCCTCC 101527660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708369951904960