Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq565 159 5e-35 seq1 138 2e-28 seq893 127 3e-25 seq1611 120 5e-23 >seq565 Length=117381234 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | | || || ||||||||||| || || || ||||| ||||| Sbjct 77119047 GCTAAGCGCCATCGTAAAGTGCTCCGGGATAACATCCAGGGCATTACAAAGCCGGCTATT 77119106 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| || ||||| |||||||| | || || | ||||||| |||| | Sbjct 77119107 CGCCGTTTGGCTCGGCGCGGTGGCGTCAAGCGCATTTCCGGTCTTATCTATGAGGAGACT 77119166 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||| | ||| |||||| | || || || |||||| ||| Sbjct 77119167 CGAGGTGTGCTTAAGGTTTTCTTAGAGAACGTTATTCGAGACGCCGTCACCTATACGGAG 77119226 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || || |||||||| |||||||| | || ||||| |||||||||| || Sbjct 77119227 CACGCCAAGCGCAAAACTGTCACAGCCATGGATGTAGTATATGCCCTGAAACGTCAGGGG 77119286 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | ||||| || || | |||| Sbjct 77119287 CGCACACTGTATGGCTTCGGCGGCTAAT 77119314 Score = 156 bits (172), Expect = 7e-34 Identities = 197/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || || | | || || |||||||||||||| || |||||||||||||| Sbjct 77058453 GCCAAGCGCCACCGAAAAGTGCTGCGGGATAACATCCAAGGCATTACCAAGCCAGCTATT 77058394 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||| | |||||||| || || || ||||||| ||| | ||||| |||| | Sbjct 77058393 CGGCGCCTTGCTAGGCGTGGTGGGGTTAAACGAATCTCTGGTTTGATTTATGAGGAGACT 77058334 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| ||||| | || | ||| ||| || | || || | ||| || ||| Sbjct 77058333 CGTGGTGTTCTGAAGGTATTTTTGGAGAACGTGATTCGGGACGCCGTGACCTACACGGAG 77058274 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||||||||| | |||||| | || || || | || |||||||| Sbjct 77058273 CACGCCAAGCGCAAGACTGTCACTGCTATGGATGTGGTTTACGCGCTCAAGCGTCAAGGA 77058214 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | | || || || || ||||||||| Sbjct 77058213 CGCACTCTGTACGGCTTCGGCGGTTAATCTT 77058183 Score = 150 bits (166), Expect = 3e-32 Identities = 190/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| | | || || || || || || ||||| ||||||||||| Sbjct 77308452 CGCCAAGCGTCACCGCAAGGTTTTGCGCGACAATATTCAGGGCATCACTAAGCCAGCTAT 77308393 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || |||||||| || || |||||||| | ||||| | ||||||| |||| Sbjct 77308392 CCGGCGCCTTGCTCGTCGCGGCGGTGTCAAGCGAATTTCTGGCCTTATCTATGAGGAGAC 77308333 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| ||||| | ||||| ||| ||| || | ||| ||| || || || || Sbjct 77308332 TCGCGGCGTTCTGAAGGTGTTCCTGGAGAACGTGATTCGTGACGCTGTCACTTACACAGA 77308273 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| |||||||| || | |||||| | || || || |||| || || || Sbjct 77308272 GCACGCCAAACGCAAGACTGTGACAGCAATGGATGTGGTTTACGCGCTGAAGCGACAGGG 77308213 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | |||| || ||||| Sbjct 77308212 GCGCACTCTTTACGGCTTTGG 77308192 Score = 147 bits (162), Expect = 3e-31 Identities = 195/268 (73%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | | || || || |||||||| || ||||||||||| || || Sbjct 77054080 GCCAAGCGCCACCGCA-AGGTGTTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 77054138 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || || ||||| ||||||| || |||| || |||| Sbjct 77054139 CCGGCGTCTGGCCCGGCGTGGCGGTGTGAAGCGGATCTCTGGTCTGATCTACGAGGAGAC 77054198 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | ||| | ||| || |||| ||| ||| || |||||| || Sbjct 77054199 TCGCGGGGTGCTCAAGGTGTTCTTGGAGAATGTGATCCGTGACGCTGTCACCTATACGGA 77054258 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 77054259 GCACGCCAAGCGCAAGACGGTCACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 77054318 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | |||| || ||||| ||||| Sbjct 77054319 ACGCACCCTTTACGGCTTTGGCGGTTAA 77054346 Score = 132 bits (146), Expect = 8e-27 Identities = 188/262 (72%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | | || || || || |||||||||||||||||||| || | Sbjct 77208162 CGCCAAGCGTCACCGTA-AGGTGTTGCGTGACAATATCCAAGGAATCACCAAGCCCGCCA 77208104 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||||| || || || ||||||||| | ||||| | | ||||| |||| Sbjct 77208103 TCCGGCGCTTGGCTCGCCGCGGCGGCGTCAAGCGTATTTCTGGCCTCATTTATGAGGAGA 77208044 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || ||||| | ||| | | | || |||| |||||| || ||| || | Sbjct 77208043 CTCGCGGAGTGCTGAAGGTTTTCTTGGAAAATGTAATCCGCGATGCTGTCACCTACACGG 77207984 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||||| ||||| ||||| ||||||| | || || || | || || || | Sbjct 77207983 AGCACGCCAAACGCAAGACGGTCACAGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 77207924 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | ||||| || || Sbjct 77207923 GACGCACTCTGTATGGCTTCGG 77207902 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| | || || ||||||||||| || ||||||||||| || || Sbjct 77264307 CGCCAAGCGCCATCGCAAAGTGCTGCGTGATAACATCCAGGGCATCACCAAGCCTGCCAT 77264366 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| || || || || || || || |||| || | | ||||| || | Sbjct 77264367 CCGTCGCTTGGCCCGACGCGGCGGCGTGAAACGCATCTCGGGCCTCATTTATGAGGAAAC 77264426 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| | ||| | || || ||| || |||| || ||| | ||| || || Sbjct 77264427 CCGCGGTGTTCTTAAGGTGTTTCTAGAGAATGTGATCCGGGACGCTGTAACCTACACGGA 77264486 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || |||||||| ||||| |||||||| | ||||| || | || || || || Sbjct 77264487 GCACGCGAAGCGTAAGACAGTCACTGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGG 77264546 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 77264547 TCGCACTCTGTACGGCTTTGG 77264567 >seq1 Length=122973662 Score = 138 bits (152), Expect = 2e-28 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | || || || || ||||| || ||||||||||| || || Sbjct 73077938 CGCTAAGCGCCACCGTAAGGTGCTGCGCGACAATATCCAGGGCATCACCAAGCCGGCCAT 73077879 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| ||||| || || ||||| | || || | |||| || |||| Sbjct 73077878 CCGGCGCCTTGCTCGCCGTGGCGGCGTGAAGCGCATTTCCGGCCTCATCTACGAGGAGAC 73077819 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || |||||| || Sbjct 73077818 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTATACAGA 73077759 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | ||||| || | || ||||| || Sbjct 73077758 GCACGCCAAGCGCAAGACGGTCACCGCCATGGATGTGGTCTACGCGCTCAAGCGTCAGGG 73077699 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || ||||| || Sbjct 73077698 CCGCACCCTCTACGGTTTCGG 73077678 Score = 131 bits (144), Expect = 3e-26 Identities = 185/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || |||||||||||||| ||| Sbjct 72390047 GCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCAGCCATC 72390106 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| || || || || ||||| |||| || | ||||||| |||| Sbjct 72390107 CGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTATGAGGAGACC 72390166 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| || || | ||| || ||| Sbjct 72390167 CGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGAG 72390226 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | ||||| || | || || || ||| Sbjct 72390227 CACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 72390286 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 72390287 CGCACCCTCTATGGCTTCGG 72390306 Score = 120 bits (132), Expect = 5e-23 Identities = 183/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | ||| || || ||||| || || ||||||||||| || || Sbjct 73121381 CGCTAAGCGCCACCGCAAAGTTCTGCGCGACAACATTCAGGGCATCACCAAGCCCGCCAT 73121322 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| || || ||||| |||| || | | || || || | Sbjct 73121321 CCGACGCCTGGCACGGCGTGGAGGCGTTAAGCGCATCTCAGGCCTTATATACGAGGAAAC 73121262 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | || | || | ||| || |||| ||||| | ||| || || Sbjct 73121261 GCGCGGAGTTCTTAAAGTATTTTTGGAGAATGTAATCCGCGATGCAGTTACCTACACGGA 73121202 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| ||||| ||||| ||||||| | || ||||| | || || || || Sbjct 73121201 GCACGCCAAACGCAAGACAGTCACGGCCATGGACGTGGTTTATGCGCTCAAGCGCCAGGG 73121142 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | ||||| ||||| Sbjct 73121141 CCGCACCCTCTATGGCTTTGG 73121121 Score = 114 bits (126), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | || || || || ||||| || ||||||||||| || || Sbjct 73073275 CGCTAAGCGCCACCGTAAGGTGCTGCGCGACAATATCCAGGGCATCACCAAGCCGGCCAT 73073334 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| ||||| || || |||||| |||| || | |||| || |||| Sbjct 73073335 CCGGCGCCTTGCTCGCCGTGGCGGCGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 73073394 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || |||||| || Sbjct 73073395 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTATACTGA 73073454 Query 16612 GCACG-CTAAACGTAAGACTGTCACCTCCA 16640 ||||| | || || ||||| |||||| ||| Sbjct 73073455 GCACGACCAAGCGCAAGACGGTCACCGCCA 73073484 >seq893 Length=109391073 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | |||| |||| ||||| || || ||||||||||| || | Sbjct 52351242 CGCTAAGCGCCACCGCA-AGGTCTTGAGAGACAACATTCAGGGCATCACCAAGCCTGCCA 52351184 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| ||||| || || ||||| ||||||| | | || || |||| Sbjct 52351183 TTCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCTGGTCTCATTTACGAGGAGA 52351124 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | ||||| ||| ||| || | || || || || |||| Sbjct 52351123 CCCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATTCGGGACGCAGTCACTTACACCG 52351064 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| |||||||| | || || || | || || || | Sbjct 52351063 AGCACGCCAAGCGCAAGACCGTCACAGCCATGGATGTGGTGTACGCGCTCAAGCGCCAGG 52351004 Query 16671 GCCG 16674 | || Sbjct 52351003 GGCG 52351000 >seq1611 Length=34552619 Score = 120 bits (132), Expect = 5e-23 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||| |||||||| || || ||||| || ||||| ||||| || || ||||| Sbjct 20688670 CTGCGGGATAATATCCAAGGCATTACAAAGCCTGCGATCCGCCGTCTCGCCCGACGTGGG 20688729 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| | ||||| | |||| || |||| || | || | || ||||| Sbjct 20688730 GGCGTCAAGCGCATTTCTGGTCTCATCTACGAGGAGACCCGGGGAGTCCTCAAAGTCTTC 20688789 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||| |||| || || | || || |||||||| || || ||||| ||| Sbjct 20688790 CTGGAAAACGTGATCCGCGACGCGGTGACTTACACGGAGCACGCCAAGCGCAAGACCGTC 20688849 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| | || || || ||||||| || || || | | ||||||||||| Sbjct 20688850 ACGGCCATGGATGTGGTGTACGCGCTGAAACGCCAGGGTCGCACCCTCTATGGTTTTGG 20688908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79059214256412