Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1685 188 8e-43 seq1724 172 6e-38 seq1162 100 3e-16 seq1399 87.8 2e-12 >seq1685 Length=141252148 Score = 188 bits (208), Expect = 8e-43 Identities = 533/813 (66%), Gaps = 25/813 (3%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || ||||||||||| | ||| ||| | || || |||| | |||| Sbjct 47457294 TTCATTTAGAAGTCAGCATCTAAGGTAAAAGAATTCTGTTGGACTT--GACACCACTCCC 47457237 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| | | ||||| | || || || || ||||||| | ||| ||| Sbjct 47457236 ATCCTCTGATACTTGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATA 47457182 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 | |||||| |||||||| | || | || | || || |||||||||| | Sbjct 47457181 TTCTACATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCC-AG 47457123 Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| ||| ||||| ||||| || || ||||| ||||| |||||||| || || Sbjct 47457122 CATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAAT 47457063 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 | || ||||| | || | || | || | |||||| || || | | ||| Sbjct 47457062 GAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAAT 47457003 Query 21421 TATATTTATTA-----TCCTA-GATGTACTAGGGGGATACAATAATTGTTTAAACATCAA 21474 ||| | | | | |||| ||| | | | | ||| | ||||| |||||||| Sbjct 47457002 TATTTCTCTCACTCTCTCCTCCGAT--AGTTTGTG--TACCAGG--TGTTTGAACATCAA 47456949 Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 || ||||||||| || ||||| ||||| || || || |||||||| ||||| || | Sbjct 47456948 GCAAGCAAAATCAG--TGTAAACCCTCATCTCTGCTAATAAATTCATTGGAAAACGTGAG 47456891 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 || ||||| | ||||| || || | ||| ||||| || ||||| | | |||||||| Sbjct 47456890 GCCAGGCATCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACTGGAAAAGAA 47456831 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654 ||||| || || ||||| || || || | |||||||| || || | ||||| ||| Sbjct 47456830 GATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTGGCCTCTTTGTCCCC 47456771 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714 ||||| ||||| | |||||| | || | |||| || || ||||| || || Sbjct 47456770 AATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATT 47456711 Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 || ||| | |||| | | ||| | ||| ||||||||| Sbjct 47456710 GAAGAGAAATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACAT 47456651 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 |||||||||||| ||||| || || || || || || || ||||| | || |||| | Sbjct 47456650 TTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAAT 47456591 Query 21835 TTGAAC-CTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893 ||||| | | | |||||| | |||| |||||||||||||| ||||| || || | Sbjct 47456590 CTGAACTATTTGGCT-AAATCGCTCCACCAAATTTTCATTTACTATGCCATCGCTTGCTG 47456532 Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATC 21926 |||| || ||| | || ||||||||||| Sbjct 47456531 CAAAGAAAACCAGAACATGGGATATAAAATATC 47456499 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 ||||| || ||||||||||| |||||||| || || || || || || || || | Sbjct 130530949 ACTATTTATGTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGT 130530890 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 |||| | ||||| || | |||| ||| |||||||||||| || ||| ||||| Sbjct 130530889 TTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATC 130530830 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTT 21929 || || ||||| || |||| |||| ||||||||||| || Sbjct 130530829 ACATGCTGCAAAGAAAGCCAGAATATGGGATATAAAATATCTTT 130530786 >seq1724 Length=455154 Score = 172 bits (190), Expect = 6e-38 Identities = 383/574 (67%), Gaps = 5/574 (1%) Strand=Plus/Plus Query 21463 TTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATT 21522 ||| |||||||| || ||||||||||| || ||||| ||||| || || || | |||||| Sbjct 265694 TTTGAACATCAAGCA-GCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATT 265752 Query 21523 AGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC 21582 ||||| || | || ||||| | ||||| || || | ||| ||||| || ||||| | Sbjct 265753 CGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGA 265812 Query 21583 TCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGA 21642 || |||||||| ||||| || || |||||||| || || | |||||||| || ||| Sbjct 265813 ACCGGAAAAGAAGATGCCTTCTACTGCAGCAAAGGCTACAACACGTTCACCATAGATAGC 265872 Query 21643 TTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGT 21702 ||||| ||| ||||| || || | ||| || | || | ||| || || Sbjct 265873 CTCTTTGTCCCCAATCCAGCACAAGGCTCAATCTGCGTTCTTCTTGACGCAAGGCATCGT 265932 Query 21703 ATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNN 21762 || || || || || ||| | |||| | |||| | ||| Sbjct 265933 TTCGATGGCATTAAAGAGAAATTCCCTTTCTTTGGCATCTTTGATGTAAGTGTCAATAAG 265992 Query 21763 NNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCT 21822 ||||||||||||||||||||| ||||| || || || || || | || ||||| | Sbjct 265993 GAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGACATAGAAACAGCA 266052 Query 21823 TGCCTCTGAACATTGAAC-CTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTC 21881 || |||| | ||||| | | | |||||| | |||| |||||||||||||| | Sbjct 266053 GGCTTCTGTAATCTGAACTATTTGGCT-AAATCGCTCCACCAAATTTTCATTTACTATGC 266111 Query 21882 CATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTA 21941 ||||||| || ||||| || ||| | | ||||||||||| || | | | Sbjct 266112 CATCACTTGCTGCAAAGAAAACCAGAAGACGGGATATAAAATATCTCTCCTCGGGCTTCA 266171 Query 21942 ATTTTTTCCAAT-CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTA 22000 || ||| | || | | || || || | || || || || || ||||| ||| | Sbjct 266172 GGGATTCCCAGTGCTGA-ATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAA 266230 Query 22001 GCAATAGCCTTTTTATACATAATCCAGATATCAT 22034 || |||||||||||||| ||||||||||| Sbjct 266231 GCCTCTGCCTTTTTATACATCTGCCAGATATCAT 266264 >seq1162 Length=100215132 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182 || |||||||||| ||||| || | ||| || |||||| | ||| || ||||| | | | Sbjct 56811293 TTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTTGTTTCTGCCATAACTGCAA 56811352 Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 ||||| || ||||| ||| || || |||||||| |||||||| || || || Sbjct 56811353 AACGCTGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGT 56811412 Query 21243 ATTCCATAAAATCAAATGGATTTTC 21267 ||||||||||||||| |||||||| Sbjct 56811413 TTTCCATAAAATCAAAAGGATTTTC 56811437 >seq1399 Length=81552678 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 9738060 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 9738001 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 9738000 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 9737941 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||| || || Sbjct 9737940 TTCTCCATAAAGTCAAATGGGTTCTC 9737915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531784553080160