Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1685 104 6e-17 seq1115 100 7e-16 seq1724 98.7 3e-15 seq1399 91.5 4e-13 >seq1685 Length=141252148 Score = 104 bits (114), Expect = 6e-17 Identities = 151/212 (71%), Gaps = 5/212 (2%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||||||||| || ||||| | |||| || | | | ||| Sbjct 47456738 AAGAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCCACCTATGGTGAA 47456797 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 ||| || | || || |||| || |||||||| |||||||| | | ||| | || Sbjct 47456798 CGTGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCCAGTTCTTTTGCATCGATA 47456857 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || ||||| | | | ||||| || || |||||||| ||||| || |||||| Sbjct 47456858 TTGTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAATTTATTAGC 47456917 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 |||||||||| || | || |||||||| || Sbjct 47456918 AGAGATGAGGG--TTTACACTGATTTTGCTTG 47456947 >seq1115 Length=110690730 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| || ||||| || || |||||| Sbjct 66335465 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAAACAGGCACCCCGTATATG 66335524 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 66335525 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAATGC 66335584 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || |||||| Sbjct 66335585 AGCAACCTGTGCACAGAAATAGTGGAGTACACC 66335617 >seq1724 Length=455154 Score = 98.7 bits (108), Expect = 3e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| || | || ||||||| || |||||||| |||||||| || | ||| | Sbjct 265860 GAACGTGTTGTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCCGGTTCTTTTGCATCG 265801 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| || || |||||||| ||||| | ||| Sbjct 265800 ATATTGTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCGAATGAACTTATT 265741 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGC 22640 ||| ||||||||||| | || |||||||| Sbjct 265740 AGCAGAGATGAGGGTTTACACTGTGATTTTGC 265709 >seq1399 Length=81552678 Score = 91.5 bits (100), Expect = 4e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| || | || ||||||| || |||||||| ||||||||||| | ||| | Sbjct 9735646 GAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCG 9735705 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| || || || ||||| ||||| | ||| Sbjct 9735706 ATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATT 9735765 Query 22609 AGCCGAGATGAGG 22621 ||| ||||||||| Sbjct 9735766 AGCAGAGATGAGG 9735778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303061630872488