Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1685 349 4e-91 seq1724 340 2e-88 seq1399 114 2e-20 seq1115 107 2e-18 >seq1685 Length=141252148 Score = 349 bits (386), Expect = 4e-91 Identities = 647/941 (69%), Gaps = 30/941 (3%) Strand=Plus/Minus Query 32314 TTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTT---CTTGAGACATAACTCCCATTT 32370 |||| |||||| |||||| | |||| ||| | || ||||| || |||||||| Sbjct 47457290 TTTAGAAGTCAGCATCTAAGGTAAAAGAATTCTGTTGGACTTGACACC--ACTCCCATCC 47457233 Query 32371 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 32430 | || || | || || | | || || || ||||| || | | ||| ||||| | Sbjct 47457232 TCTGATACTTGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 47457178 Query 32431 CCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 32490 ||| || || ||||| | || ||| || |||| |||| ||| || | Sbjct 47457177 ACATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 47457118 Query 32491 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 32550 ||| ||||| ||||| || || ||| ||||| | |||||||| || || || | Sbjct 47457117 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 47457058 Query 32551 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 32610 | || || | ||| | || || ||||| ||||| || || || | | || || Sbjct 47457057 TCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTT 47456998 Query 32611 ATCTTACTGTTTCTTC----ACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 32666 ||| ||| | || || | | ||| ||| | ||||| |||||||| || || Sbjct 47456997 CTCTCACTCTCTCCTCCGATAGTTTGTG--TACCAGG--TGTTTGAACATCAAGCAAGCA 47456942 Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 ||||| |||||| |||||| ||||| ||||| ||||| |||||||||||||| || ||| Sbjct 47456941 AAATC--AGTGTAAACCCTCATCTCTGCTAATAAATTCATTGGAAAACGTGAGGCCAGGC 47456884 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 32786 || || || || || || ||||| ||||| || ||||| || | |||||||| || ||| Sbjct 47456883 ATCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACTGGAAAAGAAGATGCCT 47456824 Query 32787 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCAC 32843 |||||||| || ||||| | || | || ||||| || | |||| ||||| Sbjct 47456823 TCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTGGCCTCTTTGTCCCCAATCCAG 47456764 Query 32844 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 32903 |||||||| |||||||| || ||||||||||| || || || ||||| |||||| Sbjct 47456763 CGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGA 47456704 Query 32904 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 32963 | | |||| || |||||| | || || ||||| | |||||||||||||| ||| Sbjct 47456703 AATTCCCTTTCTTTGAGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAA 47456644 Query 32964 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACT 33023 || |||||||| ||||| ||||| || || ||||| || | || || |||||||| ||| Sbjct 47456643 TGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACT 47456584 Query 33024 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33083 | | |||||| || | ||||||||||| ||||| || || || |||||||| || Sbjct 47456583 ATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAA 47456524 Query 33084 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG--- 33140 ||| ||||| |||||||||| | || | || | || ||||| || || Sbjct 47456523 ACCAGAACATGGGATATAAAATATCTCTCCCCGGGCTTCAG-GGATTCC---CAGTGCCA 47456468 Query 33141 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33200 || || || || | ||||| || || ||||| || || ||||| ||||| |||||| Sbjct 47456467 ATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATAC 47456408 Query 33201 ATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 || | |||||| |||| || | || ||||| || ||||| Sbjct 47456407 ATCTGCCAGATACCATGGTACTCGATGGGAAAGATGACAAA 47456367 Score = 206 bits (228), Expect = 3e-48 Identities = 379/550 (69%), Gaps = 8/550 (1%) Strand=Plus/Minus Query 32673 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 32732 ||||||| |||||| || || || | | ||| ||||||| ||||| || ||||| || Sbjct 130531224 CAGTGTAAACCCTCATCACTGCTGAAAAGTTCACTGGAAAATGTGAGGCCAGGCATCAGT 130531165 Query 32733 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 32792 || | || || ||||| ||||| | ||||| || ||||||||||| | | ||| ||| Sbjct 130531164 CCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACT 130531105 Query 32793 GCCGCAAAGGCAATAAGTCTCTCTCCAT---AACCGGCGCTGTCATGTATCC-ACTTTTG 32848 |||||||| || | ||||||| | || | ||| |||| || | Sbjct 130531104 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCAATCCAACACAAG 130531045 Query 32849 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 32908 | ||||| | |||||||| || |||| |||||| || || | ||||| |||| | | | Sbjct 130531044 A-CCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCAACGGCATTGAAGATAAATTC 130530987 Query 32909 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 32968 |||| || |||||||| ||||| ||||| | ||||||| || || ||||| || Sbjct 130530986 CCTTTCTTTGTTATCTTTA--ATATGCGTCAATAAGGAGACTATTTATGTCAGAATGTAT 130530929 Query 32969 GTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGT 33028 |||||| || || ||||| || || |||||||| | || |||||||| |||||| Sbjct 130530928 GTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATCTGAACTTCTTG 130530869 Query 33029 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33088 | |||| |||| | || ||||||| | ||| || |||| |||||||| || |||| Sbjct 130530868 AACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGCTGCAAAGAAAGCCAG 130530809 Query 33089 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 33148 | ||| |||||||||| ||| || || | || | ||| | || || || Sbjct 130530808 AATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCCCAGTGCCAAATGTCCTT 130530749 Query 33149 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 33208 || | ||||| || | | |||| || || ||||| | || |||||||| ||||| Sbjct 130530748 GGACAGGTCCACCTCCTGGGCCATCCAGAAAGAGACCTCTACTTTCTTATACATTTTCCA 130530689 Query 33209 GATGTCATGA 33218 || |||||| Sbjct 130530688 AATATCATGA 130530679 >seq1724 Length=455154 Score = 340 bits (376), Expect = 2e-88 Identities = 640/937 (68%), Gaps = 18/937 (2%) Strand=Plus/Plus Query 32314 TTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 32370 |||| |||||| |||||| | |||| ||| ||| | || |||| |||||||| Sbjct 265362 TTTAGAAGTCAGCATCTAAGGTAAAAGAATTTTCTGTTGGACTTGACACCACTCCCATCC 265421 Query 32371 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 32430 | || || || || | | | || || || ||||| || | | ||| ||||| | Sbjct 265422 TCTGATACTCTCCTCCTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 265476 Query 32431 CCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 32490 |||| || || ||||| | || ||| || |||| |||| ||| | | Sbjct 265477 CCATAAAGTCAAATGGGCTCTCTACCCCGAAAACCTTACTAAAACCCAGTTCCAGCCTAA 265536 Query 32491 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 32550 ||| |||| ||||| || || || ||||| | |||||||| || || || | Sbjct 265537 GTCTGCCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 265596 Query 32551 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 32610 | | || | ||| |||| || ||||| ||||| || || || | | ||||| | Sbjct 265597 TCATAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCTGAACAGCAT---TGATAATTG 265653 Query 32611 AT---CTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 32667 | || ||| | || || ||| | || | | ||| |||||||| || || | Sbjct 265654 TTTCTCTCACTCTCTCCTCCGATGGTTTGTGCACCAGGTATTTGAACATCAAGCA-GCAA 265712 Query 32668 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 32727 |||| ||||||| |||||| ||||| ||||| | ||| || ||||||||||| || |||| Sbjct 265713 AATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTCGAAAACGTGAGGCCAGGCA 265772 Query 32728 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 32787 | || || || || || ||||| ||||| || ||||| || || |||||||| || |||| Sbjct 265773 TCAGTCCTCGTTTCTTGAGCCACAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTT 265832 Query 32788 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACT 32844 ||||||| |||||||| | || | || ||||| | | | |||| ||||| Sbjct 265833 CTACTGCAGCAAAGGCTACAACACGTTCACCATAGATAGCCTCTTTGTCCCCAATCCAGC 265892 Query 32845 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 32904 || ||||| || ||||| || || |||||||| || || || |||||||||||| Sbjct 265893 ACAAGGCTCAATCTGCGTTCTTCTTGACGCAAGGCATCGTTTCGATGGCATTAAAGAGAA 265952 Query 32905 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 32964 | | |||| || |||||| | || || ||||| | |||||||||||||| |||| Sbjct 265953 ATTCCCTTTCTTTGGCATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 266012 Query 32965 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTT 33024 | |||||||| ||||| ||||| || | ||||| || | || || |||||||| ||| Sbjct 266013 GTATGTTTTCCATGGCAATTTGGAAGACATAGAAACAGCAGGCTTCTGTAATCTGAACTA 266072 Query 33025 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33084 | | |||||| || | ||||||||||| ||||| || ||||| |||||||| || Sbjct 266073 TTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 266132 Query 33085 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 33144 ||| | | | |||||||||| | || || || | || | ||| | | || | Sbjct 266133 CCAGAAGACGGGATATAAAATATCTCTCCTCGGGCTTCAGGGATTCCCAGTGCTGAATGT 266192 Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 | || || | ||||| || || ||||| || || |||||||||||||||||||| | Sbjct 266193 CCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCTGCCTTTTTATACATCT 266252 Query 33205 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 |||||| ||||| || | || || || | ||||| Sbjct 266253 GCCAGATATCATGGTACTCGATGGGGAAGACGACAAA 266289 >seq1399 Length=81552678 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 9735778 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 9735719 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||||| Sbjct 9735718 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 9735659 Query 32803 C 32803 | Sbjct 9735658 C 9735658 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||| | || || ||||| | ||||||||||||||| ||||| |||||||| ||||| Sbjct 9733358 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 9733299 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 ||||| || || ||||| || | || || |||||||| |||||| | |||||| || Sbjct 9733298 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 9733239 >seq1115 Length=110690730 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 66344670 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 66344611 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 66344610 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATTGGGGCAATAAGTAAA 66344551 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 66344550 CTGTTTCTTATACCATA 66344534 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| |||||||||||||| | || |||||||||| | Sbjct 66333967 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 66333908 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 66333907 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 66333848 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 66333847 AGGCTCCAGGTAAATAGC 66333830 Score = 105 bits (116), Expect = 8e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 66347487 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 66347428 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| |||||| |||||||| ||||| || || || || || ||||| | | || || | Sbjct 66347427 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCCTGAGAACAGTTT 66347368 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 66347367 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 66347317 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || || || || || | | Sbjct 66318554 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTGGCTGCCAAGA 66318495 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | ||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 66318494 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 66318435 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 66318434 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 66318389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633493519726400