Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1399 105 6e-18 seq1044 96.9 3e-15 seq944 96.9 3e-15 seq565 91.5 1e-13 >seq1399 Length=81552678 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| |||| |||||||| || ||||| | ||||| ||||||||||| ||||| | Sbjct 71370968 ACCACCACACAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGA 71371027 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| | | || || || ||||| Sbjct 71371028 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGG 71371087 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | |||||| | Sbjct 71371088 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGATTCAGC 71371147 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || | || ||||| || ||||||||||| Sbjct 71371148 CTCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCAT 71371195 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 114180 TGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGT 114239 |||| || || || || || |||||||| || | ||| || |||||| || || Sbjct 65744254 TGTAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 65744195 Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 || || || ||||||| | ||| ||||| ||||| ||||||||||| || ||||| Sbjct 65744194 TTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTG 65744135 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 || | | ||| | |||||| ||| || || |||| ||| | || ||||||||| Sbjct 65744134 GCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTC 65744075 Query 114360 AGAGTTTTTACAAAAATCTGCAT 114382 || || || || || |||||||| Sbjct 65744074 AGGGTCTTCACGAAGATCTGCAT 65744052 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || | ||| || |||||| || || || || Sbjct 65744476 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 65744417 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || ||||||||||| || ||||| || Sbjct 65744416 GCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCTTGGATCTTGGCCTTC 65744357 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 65744356 ACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 65744297 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 65744296 TTCACGAAGATCTGCAT 65744280 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || || ||||| || |||||||| || Sbjct 65744053 ATACCACCTCTCAGACGCAGGACCAGATGCAGGGTTGACTCTTTCTGGATGTTGTAGTCA 65743994 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| || || || || || ||||||| | ||| ||||| || Sbjct 65743993 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGG 65743934 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || ||||| || | | ||| | |||||| ||| || Sbjct 65743933 GGAATGCCTTCCTTATCCTGGATCTTAGCCTTCACATTTTCGATGGTGTCACTGGGCTCC 65743874 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| || |||||||| || || |||||||| Sbjct 65743873 ACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTCACGAAGATCTGCAT 65743824 >seq1044 Length=11392 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 114180 TGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGT 114239 |||| || || || || || |||||||| || | ||| || |||||| || || Sbjct 9215 TGTAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 9274 Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 || || || ||||||| | ||| ||||| ||||| ||||||||||| || ||||| Sbjct 9275 TTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTG 9334 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 || | | ||| | |||||| ||| || || |||| ||| | || ||||||||| Sbjct 9335 GCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTC 9394 Query 114360 AGAGTTTTTACAAAAATCTGCAT 114382 || || || || || |||||||| Sbjct 9395 AGGGTCTTCACGAAGATCTGCAT 9417 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || | ||| || |||||| || || || || Sbjct 8993 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 9052 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || ||||||||||| || ||||| || Sbjct 9053 GCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCTTGGATCTTGGCCTTC 9112 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 9113 ACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 9172 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 9173 TTCACGAAGATCTGCAT 9189 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || || ||||| || |||||||| || Sbjct 9416 ATACCACCTCTCAGACGCAGGACCAGATGCAGGGTTGACTCTTTCTGGATGTTGTAGTCA 9475 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| || || || || || ||||||| | ||| ||||| || Sbjct 9476 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGG 9535 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || ||||| || | | ||| | |||||| ||| || Sbjct 9536 GGAATGCCTTCCTTATCCTGGATCTTAGCCTTCACATTTTCGATGGTGTCACTGGGCTCC 9595 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| || |||||||| || || |||||||| Sbjct 9596 ACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTCACGAAGATCTGCAT 9645 >seq944 Length=110113093 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/228 (70%), Gaps = 11/228 (5%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||||| | |||||||||||||| || Sbjct 27807551 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTGCTTTTGAATGTTGTAGTC--- 27807607 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || |||||| ||||| || ||||| |||| | | || || || ||||| Sbjct 27807608 ---AG-AC----ATCTTCCAGTTGCTTGCCAGCAAAGATTGGTCTTTGCTGATCAGGAGG 27807659 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| || || | || ||| || Sbjct 27807660 AATTCCTTCCTTATCCTGGATCTTGGTCTTTACATTTTCTGTCGTATCCGAGGGTTCAAC 27807719 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||||| || || |||||||| |||||||||||||| Sbjct 27807720 CTCGAGGGTGATGGTTTTCCCTGTAAGAGTTTTCACAAAAATCTGCAT 27807767 >seq565 Length=117381234 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | |||| || |||||||| ||||| | Sbjct 72458850 ACCACCACGAAGTCTCAACACAAGATGAAGAATAGACTCCTTTTGAATATTGTAGTTAGA 72458791 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| || || || ||||| |||| || | || || || ||||| Sbjct 72458790 CAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 72458731 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | | || | || ||| | Sbjct 72458730 AATTCCTTCCTTATCCCGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCATC 72458671 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||| || ||||||||||| Sbjct 72458670 CTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 72458623 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | |||| || |||||||| |||| || Sbjct 50944599 ACCACCACGAAGTCTCAACACAAGATGAAGAATAGACTCCTTTTGAATATTGTGGTCAGA 50944540 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| || || || ||||| ||| || | || || || ||||| Sbjct 50944539 CAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAGGATCAGTCTTTGCTGATCAGGAGG 50944480 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| || | | ||| || || | || ||| || Sbjct 50944479 AATTCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCTGTCGTATCCGAGGGTTCAAC 50944420 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||| || ||||||||||| Sbjct 50944419 CTCGAGGGTGATAGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 50944372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420044875136208