Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1685 140 6e-28 seq1724 136 7e-27 >seq1685 Length=141252148 Score = 140 bits (154), Expect = 6e-28 Identities = 452/690 (66%), Gaps = 24/690 (3%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 |||||| |||| | |||||| ||||| ||||||||| || ||| ||||||| || Sbjct 47456382 ATCGAGTACCATGGTATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACC 47456441 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGT---CTGAGAACGAA 42401 |||||| | |||||| ||||||||| | | |||||| || ||| | | | | || Sbjct 47456442 GAGGAGGTGGACCTGTCCAAGGACATTGGCA-CTGGGAATCCCTGAAGCCCGGGGA-GAG 47456499 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 | |||| || | | |||| ||||| || || || |||||||| ||||| Sbjct 47456500 ATATTTTATATCCCATG--TTCTGGTTTTCTTTGCAGCAAGCGATGGCATAGTAAATGAA 47456557 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACG 42519 || ||| | || | || || ||| ||| || || ||||| ||||| | Sbjct 47456558 AATTTGGTGGAGCGATTTAGCCAAATAGTTCAGATTACA--GAAGCCCGCTGTTTCTATG 47456615 Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACA 42576 ||||||| || ||||| || ||| | || ||||| |||| | || || | ||| Sbjct 47456616 GCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGACA 47456672 Query 42577 CGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCT 42636 | |||||| |||| | || | | || ||||| ||||| || |||||||| | Sbjct 47456673 CTTACATCAAAGATCTCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTT 47456732 Query 42637 GCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCG 42696 | ||||||||||||| || ||||| | |||||| | | || || || | | Sbjct 47456733 GTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCCACCTATG 47456792 Query 42697 GCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCT 42756 | || | | |||||||| | || || || ||||||||||| || | | || || | Sbjct 47456793 GTGAACGTGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCCAGTTCTTTTGCAT 47456852 Query 42757 CCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||||||| | ||| | |||||| || ||||| || || || ||| | Sbjct 47456853 CGATATTGTGGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACGTTTTCCAATGAATTT 47456911 Query 42816 ATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC 42875 || ||||| || ||||| | | | || ||||| ||| | ||||| | ||||| Sbjct 47456912 ATTAGCAGAGATGAGGG--TTTACACTGATTTTGCTTGCTTGATGTTC---AAACACCTG 47456966 Query 42876 AGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAG 42935 ||||| | ||| ||||| | || | | || || | | || || |||| || Sbjct 47456967 GTACACAAACTATCGGAGGAGAGAGTGAGAGAAATAATTATCAATGCTGTTCAGATAGAA 47457026 Query 42936 AAGGAGTTCCTCACGCAGTCGCTGCCCGTG 42965 |||| |||||||| || | |||| ||| Sbjct 47457027 CAGGAATTCCTCACCGAGGCCTTGCCTGTG 47457056 >seq1724 Length=455154 Score = 136 bits (150), Expect = 7e-27 Identities = 446/679 (66%), Gaps = 32/679 (5%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 |||||| |||| || |||||| ||||| || ||||| || ||| ||||||| || Sbjct 266274 ATCGAGTACCATGATATCTGGCAGATGTATAAAAAGGCAGAGGCTTCCTTCTGGACCACC 266215 Query 42345 GAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399 |||||| | |||||| ||||||||| | || |||||| || ||| | ||| | | Sbjct 266214 GAGGAGGTGGACCTGTCCAAGGACATTCAGCA--CTGGGAATCCCTGAAGCCCGAGGA-G 266158 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | | |||| || | |||| ||||| || || ||| |||||||| |||| Sbjct 266157 AGATATTTTATATCCCGTC--TTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATG 266100 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTA 42517 | || ||| | || | || || ||| ||| || || |||| ||||| Sbjct 266099 AAAATTTGGTGGAGCGATTTAGCCAAATAGTTCAGATTACA--GAAGCCTGCTGTTTCTA 266042 Query 42518 CGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---A 42574 | |||||| || ||||| || ||| | || ||||| |||| | || || | | Sbjct 266041 TGTCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGA 265985 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 ||| |||||| ||| || || | | || || || ||||| || |||||||| Sbjct 265984 CACTTACATCAAAGATGCCAAAGAAAGGGAATTTCTCTTTAATGCCATCGAAACGATGCC 265925 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694 ||| |||||||||| || || || || | |||||| | | || || | | Sbjct 265924 TTGCGTCAAGAAGAACGCAGATTGAGCCTTGTGCTGGATTGGGGACAAAGAGGCTATCTA 265865 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754 || || | | ||||||||| | || || || ||||||||||| || || | || || Sbjct 265864 TGGTGAACGTGTTGTAGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCCGGTTCTTTTGC 265805 Query 42755 CTCCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 || || || ||||||||| | ||| | |||||| || ||||| || ||||| |||| Sbjct 265804 ATCGATATTGTGGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACGTTTTCGAATGAAC 265746 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACC 42873 | || ||||| || ||||| | || | || |||| |||| | ||||| | ||| Sbjct 265745 TTATTAGCAGAGATGAGGGTTTACACTGTGATTTTG-CTGCTTGATGTTC---AAATACC 265690 Query 42874 TCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGG---CCATCATCACGGAGGCCGTGGAGA 42930 | |||||| || ||| ||||| | || | | | || |||| | || || ||| Sbjct 265689 TGGTGCACAAACCATCGGAGGAGAGAGTGAGAGAAACAATTATCA---ATGCTGTTCAGA 265633 Query 42931 TCGAGAAGGAGTTCCTCAC 42949 | || |||| |||||||| Sbjct 265632 TAGAACAGGAATTCCTCAC 265614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944132814667840