Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq683 104 2e-17 seq91 96.9 3e-15 seq1399 89.7 5e-13 seq1044 89.7 5e-13 seq1115 82.4 8e-11 >seq683 Length=106955855 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | ||| | || | | | ||||| || || ||||||||||| | Sbjct 98906987 CCACCTCTGAGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 98907046 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || ||||| || | | |||| || | ||| ||||| ||||| Sbjct 98907047 AGGGTGCGACCATCTTCTAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 98907106 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||| || | | || | |||||| | | ||||||| Sbjct 98907107 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 98907166 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || |||||||||||||| || ||||| |||||||| Sbjct 98907167 TCGAGGGTGATTGTCTTACCAGTCAGAGTCTTCACAAAGATCTGCAT 98907213 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | ||| | || | | | ||||| || || ||||||||||| | Sbjct 98906531 CCACCTCTGAGACGGAGAACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAC 98906590 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || ||||| || | | |||| || | ||| ||||| ||||| Sbjct 98906591 AGGGTGCGACCATCTTCCAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 98906650 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||| || | | || | |||||| | | ||||||| Sbjct 98906651 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 98906710 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || ||||||||||| || || || || |||||||| Sbjct 98906711 TCGAGGGTAATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 98906757 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||| |||| || || || | | ||||| || || ||||||||||| | Sbjct 98905619 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 98905678 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || ||||| || | | |||| || | ||| ||||| ||||| Sbjct 98905679 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 98905738 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||| || | | || | |||||| | | ||||||| Sbjct 98905739 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 98905798 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | ||||| ||||| || || || || || |||||||| Sbjct 98905799 TCGAGGGTGATGGTTTTGCCAGTGAGTGTCTTCACGAAGATCTGCAT 98905845 >seq91 Length=163208435 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||||| ||||| || | || | | ||||| || || ||||||||||| Sbjct 66929496 GCCACCTCGCAGGCGCAACACCAGGTGCCGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 66929555 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || ||||| || ||||| |||| | | || |||||||| ||||| || || Sbjct 66929556 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 66929615 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| |||| | ||| | | || | |||||| | | ||| | Sbjct 66929616 GATACCCTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 66929674 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | ||||| | || || || || ||||| ||||||||| Sbjct 66929675 CCTCAAGGGTGATGGTTTTGGCTGTGAGGGTCTTCACAAAGATCTGCATG 66929724 >seq1399 Length=81552678 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||||| || | ||| | | ||||||| || || ||||||||||| Sbjct 65744050 CCACCTCTCAGACGCAGGACCAGATGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAA 65743991 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || || || || || | | |||| || | ||| ||||| || || Sbjct 65743990 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 65743931 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || ||| || || | | ||| | |||||| | | ||||||| Sbjct 65743930 ATGCCTTCCTTATCCTGGATCTTAGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 65743871 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| |||||||| || || |||||||| Sbjct 65743870 TCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTCACGAAGATCTGCAT 65743824 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||||| || | |||| | | |||||||| || ||||||||||| Sbjct 65744278 CCACCTCTCAGACGCAGGACCAGGTGTAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 65744219 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || || || || || | | |||| || | ||| ||||| ||||| Sbjct 65744218 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 65744159 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || |||||||| || ||| || || | | ||| | |||||| | | |||||| Sbjct 65744158 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 65744099 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || ||||| || || || || |||||||| Sbjct 65744098 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 65744052 >seq1044 Length=11392 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||||| || | ||| | | ||||||| || || ||||||||||| Sbjct 9419 CCACCTCTCAGACGCAGGACCAGATGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAA 9478 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || || || || || | | |||| || | ||| ||||| || || Sbjct 9479 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 9538 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || ||| || || | | ||| | |||||| | | ||||||| Sbjct 9539 ATGCCTTCCTTATCCTGGATCTTAGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 9598 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| |||||||| || || |||||||| Sbjct 9599 TCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTCACGAAGATCTGCAT 9645 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||||| || | |||| | | |||||||| || ||||||||||| Sbjct 9191 CCACCTCTCAGACGCAGGACCAGGTGTAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 9250 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || || || || || | | |||| || | ||| ||||| ||||| Sbjct 9251 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 9310 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || |||||||| || ||| || || | | ||| | |||||| | | |||||| Sbjct 9311 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 9370 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || ||||| || || || || |||||||| Sbjct 9371 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 9417 >seq1115 Length=110690730 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||| || || | ||| |||||||||||||| ||| |||| || ||||| | Sbjct 66335615 TGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 66335556 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 |||| || ||||| || | |||||| ||||||| ||||| Sbjct 66335555 TGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGG 66335516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496153941852480