Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq91 111 1e-19 seq944 100 2e-16 seq1399 86.0 4e-12 seq1 84.2 2e-11 seq565 82.4 5e-11 >seq91 Length=163208435 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||||||||||| | || || | || |||| || ||||| || |||||||| || Sbjct 66929495 TGCCACCTCGCAGGCGCAACACCAGGTGCCGGGTGGACTCTTTCTGGATGTTGTAGTCTG 66929554 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 |||| | | | || || | |||||||| || |||||| |||||| ||||| || Sbjct 66929555 AGAGAGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTG 66929614 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || |||||||| ||||||| ||| ||| | || || || || || || | Sbjct 66929615 GGATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 66929674 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 | || | ||| |||||||| |||| || || || ||||| || ||||| |||| Sbjct 66929675 CCTCAAGGGTGATGGTTTTGGCTGTGAGGGTCTTCACAAAGATCTGCATGTTTG 66929728 >seq944 Length=110113093 Score = 100 bits (110), Expect = 2e-16 Identities = 158/227 (70%), Gaps = 11/227 (5%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| | ||||| |||||||| || Sbjct 27807552 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTGCTTTTGAATGTTGTAGTC---- 27807607 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | ||||| | ||| |||||||| | || | || || || ||| Sbjct 27807608 AGA-------CATCTTCCAGTTGCTTGCCAGCAAAGATTGGTCTTTGCTGATCAGGAGGA 27807660 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| | |||||| ||||| | ||||| ||| || Sbjct 27807661 ATTCCTTCCTTATCCTGGATCTTGGTCTTTACATTTTCTGTCGTATCCGAGGGTTCAACC 27807720 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| |||||||| ||||| |||||||| |||||||| ||||| Sbjct 27807721 TCGAGGGTGATGGTTTTCCCTGTAAGAGTTTTCACAAAAATCTGCAT 27807767 >seq1399 Length=81552678 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | || ||| || || |||||||| ||||| |||||||| || ||||| | Sbjct 71370969 CCACCACACAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGAC 71371028 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | ||| | || || || ||| Sbjct 71371029 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGA 71371088 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| ||| | Sbjct 71371089 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGATTCAGCC 71371148 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || || | || ||||| || ||||| ||||| || Sbjct 71371149 TCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATTTT 71371198 >seq1 Length=122973662 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 14988 TTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATAT 15047 ||| || |||||||| || |||| | | | || || | ||||||||||| |||| Sbjct 23278977 TTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAATAT 23278918 Query 15048 CAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTC 15107 || |||||| ||||| ||| || || |||||||| ||||||| || ||| | || Sbjct 23278917 CAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCATTGACATTCTC 23278858 Query 15108 TATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAA 15167 || || || || || || || | ||| ||||| || || || || || || ||||| Sbjct 23278857 AATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAA 23278798 Query 15168 AATTTGCAT 15176 || ||||| Sbjct 23278797 GATCTGCAT 23278789 >seq565 Length=117381234 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| |||| || ||||| || ||||| | Sbjct 72458849 CCACCACGAAGTCTCAACACAAGATGAAGAATAGACTCCTTTTGAATATTGTAGTTAGAC 72458790 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | || |||||||| | |||| | || || || ||| Sbjct 72458789 AAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 72458730 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || | || ||| |||||| ||||||| |||| ||| | Sbjct 72458729 ATTCCTTCCTTATCCCGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCATCC 72458670 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 72458669 TCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 72458620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357315844678940