Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nomascus_20leucogenys_20[refseq_20GCF_5F000146795.2_202012-12-08] 17,484 sequences; 2,962,060,179 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq628 179 5e-40 seq565 113 7e-20 >seq628 Length=118206036 Score = 179 bits (198), Expect = 5e-40 Identities = 174/224 (78%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||||||||| ||||||||||| || || || ||||| || |||||||| || Sbjct 29169638 GTCTGGAACAACTGCTCATCACCCCATTCGGGATGCTCCTGTTTAAGCACATCGCATACT 29169579 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | |||||| || ||||| |||||||| | ||| ||||| | |||||| Sbjct 29169578 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 29169519 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| ||||| || |||| || || |||| || | || | ||| | Sbjct 29169518 ACCTCCTGCCCCACAGCAAACCGTAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 29169459 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 |||| || |||||||| ||||| |||||||| || || ||||| Sbjct 29169458 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAAT 29169415 Score = 176 bits (194), Expect = 7e-39 Identities = 232/322 (72%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 8854 CTTGAGGAGTTCCGCGTTGGAAACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGC 8913 ||||| ||| || | | | ||| | ||| | || || ||||| |||||||| || Sbjct 29171690 CTTGATGAGCTCTGGATCTGGAACACTGAATGACGCAAAGGGACAGCCCTTCACGTTATT 29171631 Query 8914 ACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAA 8973 || ||||| |||||||| | || || || | ||| | ||||| || || || || || Sbjct 29171630 GCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAA 29171571 Query 8974 GGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGA 9033 ||||| || |||||||| | || || || || || || |||| || ||||||||||| Sbjct 29171570 AGTGCTTGGCTTCCAGTAGTCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGA 29171511 Query 9034 AAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTC 9093 || || || || | || | ||| ||||||| ||||||||| | ||||| || ||||| Sbjct 29171510 GAATGGTGCTCCAACTTCTACCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTC 29171451 Query 9094 GACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTC 9153 || | | | ||| || || || ||||| |||| ||| |||||||| ||||||||||| Sbjct 29171450 TACCAGAAGGGCAGGATACAGCTCCACAGCATCGATGTCACCATAGAGTGCTTCCAACTC 29171391 Query 9154 GGCAGCTATCTCCTTCTCACCT 9175 |||| || ||||| || ||| Sbjct 29171390 TGCAGACATTTCCTTTTCTCCT 29171369 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||||| || || | ||||| ||||||||| ||| || ||||| || | ||| ||| Sbjct 29167865 TCACCTTTGACACCCAAGGGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTGGTA 29167806 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || || || ||||||||||| ||||||||||| || | |||||| Sbjct 29167805 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACGTTGTAAGTT 29167746 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | || |||||| Sbjct 29167745 GGTGGACTGTCAATCAAATGTGATCTGGCT 29167716 Score = 120 bits (132), Expect = 4e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| ||| | |||||||| || |||||| ||| ||| | || Sbjct 29168476 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 29168417 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || ||||| ||||| || | || || || ||||||| ||| |||||||||||||| Sbjct 29168416 AAACTGATGTGTGAAGTGCTGGGCAAAGAATGCAAACATCACGTTTGTGCCCTGGGGATC 29168357 Query 10241 GGGGATAAAGGTCCTCCGAATAA-AAACTTTGTCCACAATCTGTGTTGAATCGGGCAGAC 10299 ||||| || | || | | || ||||||| |||||||| | ||||||| || || Sbjct 29168356 AGGGATGAACTTTCTTCTTAGAAGAAACTTT-TCCACAATTTCATTTGAATCAGGAAGCT 29168298 Query 10300 GCGCCTTACCTGA 10312 || |||||||| Sbjct 29168297 GCTTTTTACCTGA 29168285 Score = 107 bits (118), Expect = 3e-18 Identities = 194/284 (68%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || || ||||| |||||||| || |||| ||||| || | | | || Sbjct 29170223 CCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCCAGCAATATA 29170164 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 ||||||||||| | || |||| || || ||| ||| || |||| ||| Sbjct 29170163 GAATTGTTGTAGATAAACTGTTGATAGTTGTAGTTCTGGTCATGAATTTGAAAGGTGTCA 29170104 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| | |||||||| || ||||| || || || || || |||||| Sbjct 29170103 GGCAGAAGGGGATGCCAGTGATAGAGGGTGTTAAACTCAGCAGCAATACGATTTTGGTAC 29170044 Query 9616 TGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTG 9675 || || | ||| |||| ||| |||||||| | || | |||||| || || || Sbjct 29170043 TGGAATTGTTTGTTGAAAAGTAGCTCTGGGTCAAATTTCAGTTTGAAGTGATAGCCACTC 29169984 Query 9676 AGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | ||||| ||||| | | || | ||| ||||| || || || Sbjct 29169983 AAGTGCTGCACATAATCTTCAATCACAATCTTAATAGTCTCTCC 29169940 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || || |||| | |||| || || ||||| |||||||||||| ||| | Sbjct 29166806 CTTACGTGTTGAGCAGTTTTCACCATAGAATCCTGTCCGGGTACAATCGCACTTATACTG 29166747 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| ||||| |||| ||||| ||||| || || || ||||| ||||||||||| || Sbjct 29166746 GTCAAATCCCACACTCATACATACACCTCGGTTTTGACATGGGTGGGAACAGCAAGGATT 29166687 Query 10960 GGCTGCAATTTAA 10972 ||| ||||| || Sbjct 29166686 TGCTACAATTAAA 29166674 >seq565 Length=117381234 Score = 113 bits (124), Expect = 7e-20 Identities = 176/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || ||||||| || || | || ||||| || ||||| || ||||||||| Sbjct 101538691 GTGGCCGTCTTGACGATGTTAAAGCCCATCTCGCCGCCAAATGTGCTCGGCTTCCAGTAC 101538632 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| || |||||| ||| | | ||| || || | |||||| |||||||| | ||| Sbjct 101538631 TCCGGAGAACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCT 101538572 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTA 9111 || || ||||| || ||||| | ||| | ||||| | || | || || | ||| Sbjct 101538571 ATCATACTCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAA-GAAGCAGTCCGGGGTA 101538513 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 | || | || || | ||| ||||| | | |||||||| || || ||||||||||| Sbjct 101538512 AAACTCCAACGCATCAATGTCTCCATACAACTCCTCCAACTCCGCTGCCATCTCCTTCTC 101538453 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 101538452 TCCTACAAG 101538444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723569829245600